| Literature DB >> 22058823 |
Abstract
In the structure of the title molecular salt, C(5)H(7)N(2) (+)·C(8)H(11)O(4) (-), the cis monoanions associate through short O-H⋯O hydrogen bonds in the carb-oxy-lic acid groups [graph set C(7)], forming zigzag chains which extend along the c axis. These are inter-linked through pyridinium and amine N-H⋯O hydrogen bonds, giving a three-dimensional network structure.Entities:
Year: 2011 PMID: 22058823 PMCID: PMC3201255 DOI: 10.1107/S1600536811039547
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H7N2+·C8H11O4− | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 4840 reflections |
| θ = 3.2–28.7° | |
| µ = 0.10 mm−1 | |
| Block, colourless | |
| 0.30 × 0.25 × 0.20 mm |
| Oxford Diffraction Gemini-S CCD-detector diffractometer | 1709 independent reflections |
| Radiation source: Enhance (Mo) X-ray source | 1448 reflections with |
| graphite | |
| Detector resolution: 16.077 pixels mm-1 | θmax = 28.8°, θmin = 3.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 9670 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1709 reflections | (Δ/σ)max < 0.001 |
| 188 parameters | Δρmax = 0.15 e Å−3 |
| 1 restraint | Δρmin = −0.16 e Å−3 |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| O11 | −0.08623 (9) | 0.42384 (12) | 0.16082 (11) | 0.0293 (4) | |
| O12 | 0.08627 (8) | 0.38250 (12) | 0.21757 (10) | 0.0262 (3) | |
| O21 | 0.01171 (10) | 0.40723 (12) | 0.51058 (12) | 0.0285 (3) | |
| O22 | 0.17703 (9) | 0.30714 (12) | 0.50187 (12) | 0.0296 (3) | |
| C1 | −0.06239 (12) | 0.25883 (16) | 0.31330 (14) | 0.0202 (4) | |
| C2 | 0.02258 (13) | 0.20096 (16) | 0.40246 (15) | 0.0223 (5) | |
| C3 | 0.10393 (14) | 0.10098 (18) | 0.34520 (18) | 0.0311 (5) | |
| C4 | 0.04378 (15) | −0.01169 (19) | 0.2767 (2) | 0.0410 (6) | |
| C5 | −0.03704 (15) | 0.04676 (19) | 0.18597 (18) | 0.0340 (6) | |
| C6 | −0.11879 (14) | 0.14099 (17) | 0.24603 (17) | 0.0272 (5) | |
| C11 | −0.01574 (12) | 0.36284 (16) | 0.22481 (14) | 0.0200 (5) | |
| C21 | 0.07930 (13) | 0.30994 (17) | 0.47466 (14) | 0.0222 (5) | |
| N1A | 0.16603 (12) | 0.28917 (15) | 0.99803 (15) | 0.0301 (4) | |
| N41A | 0.30073 (13) | 0.14997 (18) | 0.68510 (15) | 0.0320 (5) | |
| C2A | 0.14635 (14) | 0.35553 (19) | 0.89470 (16) | 0.0306 (5) | |
| C3A | 0.18908 (13) | 0.31222 (17) | 0.78984 (16) | 0.0285 (5) | |
| C4A | 0.25659 (12) | 0.19462 (16) | 0.78670 (15) | 0.0236 (5) | |
| C5A | 0.27516 (14) | 0.12848 (18) | 0.89698 (16) | 0.0289 (5) | |
| C6A | 0.22940 (14) | 0.17671 (18) | 0.99826 (17) | 0.0309 (5) | |
| H1 | −0.11940 | 0.30510 | 0.36020 | 0.0240* | |
| H2 | −0.02010 | 0.14740 | 0.46010 | 0.0270* | |
| H21 | 0.046 (2) | 0.473 (3) | 0.561 (3) | 0.069 (8)* | |
| H31B | 0.15200 | 0.14990 | 0.29080 | 0.0370* | |
| H32B | 0.14940 | 0.06050 | 0.40700 | 0.0370* | |
| H41B | 0.09730 | −0.06800 | 0.23550 | 0.0490* | |
| H42B | 0.00420 | −0.06880 | 0.33280 | 0.0490* | |
| H51B | 0.00320 | 0.09640 | 0.12510 | 0.0410* | |
| H52B | −0.07640 | −0.02690 | 0.14720 | 0.0410* | |
| H61B | −0.16300 | 0.08910 | 0.30200 | 0.0330* | |
| H62B | −0.16790 | 0.17830 | 0.18600 | 0.0330* | |
| H1A | 0.1408 (18) | 0.319 (2) | 1.0674 (19) | 0.038 (6)* | |
| H2A | 0.10230 | 0.43290 | 0.89560 | 0.0370* | |
| H3A | 0.17420 | 0.35960 | 0.71970 | 0.0340* | |
| H5A | 0.31920 | 0.05120 | 0.89970 | 0.0350* | |
| H6A | 0.24190 | 0.13130 | 1.06990 | 0.0370* | |
| H41A | 0.3409 (18) | 0.078 (2) | 0.687 (2) | 0.047 (6)* | |
| H42A | 0.2841 (16) | 0.193 (2) | 0.615 (2) | 0.038 (6)* |
| O11 | 0.0297 (6) | 0.0270 (6) | 0.0312 (7) | 0.0010 (5) | −0.0051 (5) | 0.0106 (6) |
| O12 | 0.0244 (6) | 0.0291 (6) | 0.0251 (6) | −0.0047 (5) | 0.0004 (5) | 0.0028 (5) |
| O21 | 0.0321 (6) | 0.0263 (6) | 0.0272 (6) | 0.0042 (5) | −0.0021 (6) | −0.0066 (6) |
| O22 | 0.0304 (6) | 0.0316 (6) | 0.0269 (6) | 0.0036 (5) | −0.0062 (5) | −0.0019 (6) |
| C1 | 0.0205 (7) | 0.0188 (8) | 0.0212 (8) | 0.0009 (6) | 0.0009 (6) | −0.0003 (7) |
| C2 | 0.0267 (8) | 0.0193 (8) | 0.0209 (8) | −0.0009 (7) | 0.0007 (7) | 0.0046 (7) |
| C3 | 0.0325 (9) | 0.0253 (9) | 0.0354 (10) | 0.0084 (8) | −0.0064 (8) | −0.0016 (8) |
| C4 | 0.0439 (10) | 0.0247 (9) | 0.0543 (13) | 0.0080 (8) | −0.0046 (10) | −0.0118 (9) |
| C5 | 0.0387 (10) | 0.0270 (9) | 0.0363 (11) | −0.0064 (8) | −0.0040 (9) | −0.0106 (8) |
| C6 | 0.0269 (8) | 0.0226 (8) | 0.0322 (10) | −0.0068 (7) | −0.0053 (7) | 0.0039 (8) |
| C11 | 0.0254 (8) | 0.0166 (8) | 0.0179 (8) | −0.0006 (6) | −0.0006 (6) | −0.0031 (6) |
| C21 | 0.0287 (8) | 0.0222 (8) | 0.0157 (8) | 0.0017 (7) | −0.0004 (6) | 0.0051 (7) |
| N1A | 0.0318 (7) | 0.0344 (8) | 0.0240 (8) | 0.0016 (6) | 0.0021 (7) | −0.0067 (8) |
| N41A | 0.0366 (8) | 0.0293 (9) | 0.0302 (9) | 0.0098 (7) | 0.0024 (7) | −0.0044 (7) |
| C2A | 0.0324 (9) | 0.0258 (9) | 0.0335 (10) | 0.0077 (8) | 0.0012 (8) | −0.0007 (9) |
| C3A | 0.0334 (9) | 0.0241 (9) | 0.0281 (9) | 0.0057 (7) | −0.0019 (8) | 0.0023 (8) |
| C4A | 0.0225 (7) | 0.0209 (8) | 0.0275 (9) | −0.0010 (6) | −0.0021 (7) | −0.0032 (8) |
| C5A | 0.0305 (9) | 0.0233 (9) | 0.0329 (10) | 0.0054 (7) | −0.0085 (8) | −0.0012 (8) |
| C6A | 0.0334 (9) | 0.0328 (9) | 0.0264 (9) | −0.0001 (8) | −0.0080 (8) | 0.0013 (9) |
| O11—C11 | 1.2665 (19) | C1—H1 | 0.9800 |
| O12—C11 | 1.2556 (18) | C2—H2 | 0.9800 |
| O21—C21 | 1.323 (2) | C3—H32B | 0.9700 |
| O22—C21 | 1.2248 (19) | C3—H31B | 0.9700 |
| O21—H21 | 0.95 (3) | C4—H42B | 0.9700 |
| N1A—C6A | 1.347 (2) | C4—H41B | 0.9700 |
| N1A—C2A | 1.349 (2) | C5—H51B | 0.9700 |
| N41A—C4A | 1.331 (2) | C5—H52B | 0.9700 |
| N1A—H1A | 0.88 (2) | C6—H61B | 0.9700 |
| N41A—H41A | 0.86 (2) | C6—H62B | 0.9700 |
| N41A—H42A | 0.91 (2) | C2A—C3A | 1.351 (2) |
| C1—C2 | 1.543 (2) | C3A—C4A | 1.418 (2) |
| C1—C11 | 1.532 (2) | C4A—C5A | 1.413 (2) |
| C1—C6 | 1.542 (2) | C5A—C6A | 1.348 (3) |
| C2—C3 | 1.534 (2) | C2A—H2A | 0.9300 |
| C2—C21 | 1.508 (2) | C3A—H3A | 0.9300 |
| C3—C4 | 1.532 (3) | C5A—H5A | 0.9300 |
| C4—C5 | 1.524 (3) | C6A—H6A | 0.9300 |
| C5—C6 | 1.515 (3) | ||
| C21—O21—H21 | 113.6 (15) | C2—C3—H31B | 109.00 |
| C2A—N1A—C6A | 120.01 (16) | C2—C3—H32B | 109.00 |
| C6A—N1A—H1A | 117.9 (13) | C5—C4—H41B | 109.00 |
| C2A—N1A—H1A | 122.0 (13) | C5—C4—H42B | 109.00 |
| H41A—N41A—H42A | 122 (2) | C3—C4—H42B | 109.00 |
| C4A—N41A—H41A | 118.6 (15) | C3—C4—H41B | 109.00 |
| C4A—N41A—H42A | 119.4 (13) | H41B—C4—H42B | 108.00 |
| C2—C1—C6 | 109.55 (13) | C6—C5—H51B | 109.00 |
| C2—C1—C11 | 114.64 (12) | C4—C5—H52B | 109.00 |
| C6—C1—C11 | 110.53 (13) | C6—C5—H52B | 109.00 |
| C1—C2—C21 | 112.88 (13) | H51B—C5—H52B | 108.00 |
| C1—C2—C3 | 113.38 (14) | C4—C5—H51B | 109.00 |
| C3—C2—C21 | 112.67 (13) | C5—C6—H62B | 109.00 |
| C2—C3—C4 | 111.46 (14) | H61B—C6—H62B | 108.00 |
| C3—C4—C5 | 111.52 (15) | C1—C6—H61B | 109.00 |
| C4—C5—C6 | 110.92 (16) | C1—C6—H62B | 109.00 |
| C1—C6—C5 | 112.68 (14) | C5—C6—H61B | 109.00 |
| O11—C11—C1 | 115.58 (13) | N1A—C2A—C3A | 121.56 (17) |
| O11—C11—O12 | 123.82 (14) | C2A—C3A—C4A | 120.03 (16) |
| O12—C11—C1 | 120.59 (13) | N41A—C4A—C3A | 121.53 (16) |
| O21—C21—C2 | 113.18 (13) | C3A—C4A—C5A | 116.50 (15) |
| O22—C21—C2 | 123.99 (15) | N41A—C4A—C5A | 121.97 (15) |
| O21—C21—O22 | 122.77 (15) | C4A—C5A—C6A | 120.41 (16) |
| C6—C1—H1 | 107.00 | N1A—C6A—C5A | 121.50 (17) |
| C2—C1—H1 | 107.00 | N1A—C2A—H2A | 119.00 |
| C11—C1—H1 | 107.00 | C3A—C2A—H2A | 119.00 |
| C1—C2—H2 | 106.00 | C2A—C3A—H3A | 120.00 |
| C3—C2—H2 | 106.00 | C4A—C3A—H3A | 120.00 |
| C21—C2—H2 | 106.00 | C4A—C5A—H5A | 120.00 |
| C4—C3—H32B | 109.00 | C6A—C5A—H5A | 120.00 |
| H31B—C3—H32B | 108.00 | N1A—C6A—H6A | 119.00 |
| C4—C3—H31B | 109.00 | C5A—C6A—H6A | 119.00 |
| C6A—N1A—C2A—C3A | −0.2 (3) | C3—C2—C21—O21 | 171.15 (14) |
| C2A—N1A—C6A—C5A | 0.6 (3) | C3—C2—C21—O22 | −11.6 (2) |
| C6—C1—C2—C3 | 51.98 (17) | C1—C2—C21—O21 | 41.13 (19) |
| C11—C1—C2—C21 | 56.73 (18) | C1—C2—C21—O22 | −141.58 (16) |
| C6—C1—C2—C21 | −178.36 (13) | C2—C3—C4—C5 | 53.7 (2) |
| C11—C1—C2—C3 | −72.93 (17) | C3—C4—C5—C6 | −56.2 (2) |
| C2—C1—C11—O11 | −171.66 (14) | C4—C5—C6—C1 | 57.4 (2) |
| C2—C1—C11—O12 | 9.2 (2) | N1A—C2A—C3A—C4A | −0.2 (3) |
| C6—C1—C11—O11 | 63.95 (18) | C2A—C3A—C4A—N41A | −179.40 (16) |
| C6—C1—C11—O12 | −115.22 (16) | C2A—C3A—C4A—C5A | 0.0 (2) |
| C11—C1—C6—C5 | 72.82 (18) | N41A—C4A—C5A—C6A | 179.81 (17) |
| C2—C1—C6—C5 | −54.43 (19) | C3A—C4A—C5A—C6A | 0.4 (2) |
| C21—C2—C3—C4 | 177.72 (15) | C4A—C5A—C6A—N1A | −0.7 (3) |
| C1—C2—C3—C4 | −52.5 (2) |
| H··· | ||||
| N1A—H1A···O12i | 0.88 (2) | 1.91 (2) | 2.795 (2) | 180 (3) |
| N41A—H41A···O12ii | 0.86 (2) | 2.14 (2) | 2.989 (2) | 168 (2) |
| N41A—H42A···O22 | 0.91 (2) | 2.13 (2) | 2.974 (2) | 152.6 (18) |
| O21—H21···O11iii | 0.95 (3) | 1.59 (3) | 2.5302 (17) | 170 (3) |
| C2A—H2A···O21iii | 0.93 | 2.46 | 3.287 (2) | 149 |
| C3A—H3A···O22 | 0.93 | 2.49 | 3.225 (2) | 136 |
| C3A—H3A···O11iii | 0.93 | 2.47 | 3.222 (2) | 138 |
| C6A—H6A···O11iv | 0.93 | 2.38 | 3.048 (2) | 128 |
| C3—H31B···O12 | 0.97 | 2.56 | 3.123 (2) | 117 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1 | 0.88 (2) | 1.91 (2) | 2.795 (2) | 180 (3) |
| N41 | 0.86 (2) | 2.14 (2) | 2.989 (2) | 168 (2) |
| N41 | 0.91 (2) | 2.13 (2) | 2.974 (2) | 152.6 (18) |
| O21—H21⋯O11iii | 0.95 (3) | 1.59 (3) | 2.5302 (17) | 170 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .