| Literature DB >> 22058794 |
Nurasyikin Hamzah, Nurziana Ngah, Shafida Abd Hamid, Aisyah Saad Abdul Rahim.
Abstract
In the title compound, C(15)H(20)N(2)O(3), the benzimidazole ring is essentially planar, with a maximum deviation from the mean plane of 0.012 (1) Å. The crystal structure is stabilized by inter-molecular O-H⋯N hydrogen bonds, forming centrosymmetric dimers, which are connected in the [100] direction through weak C-H⋯O contacts.Entities:
Year: 2011 PMID: 22058794 PMCID: PMC3201285 DOI: 10.1107/S1600536811037421
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H20N2O3 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 5332 reflections | |
| θ = 2.1–25.0° | |
| µ = 0.09 mm−1 | |
| α = 94.671 (3)° | |
| β = 106.903 (2)° | Plate, colourless |
| γ = 98.334 (3)° | 0.60 × 0.20 × 0.07 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 2401 independent reflections |
| Radiation source: fine-focus sealed tube | 2075 reflections with |
| graphite | |
| Detector resolution: 83.66 pixels mm-1 | θmax = 25.0°, θmin = 2.1° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 10526 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2401 reflections | (Δ/σ)max < 0.001 |
| 187 parameters | Δρmax = 0.20 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| 0 constraints |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| O1 | 0.27470 (12) | 0.59246 (12) | 0.65294 (11) | 0.0183 (3) | |
| O2 | 0.45117 (13) | 0.43517 (13) | 0.75699 (12) | 0.0241 (3) | |
| O3 | −0.40580 (13) | −0.06135 (12) | 0.88681 (11) | 0.0184 (3) | |
| H3A | −0.315 (3) | −0.088 (2) | 0.879 (2) | 0.045 (6)* | |
| N1 | −0.14250 (14) | 0.23821 (13) | 0.99931 (12) | 0.0132 (3) | |
| N2 | 0.12077 (14) | 0.19893 (14) | 1.09005 (12) | 0.0138 (3) | |
| C1 | 0.11012 (17) | 0.28238 (16) | 0.97476 (15) | 0.0134 (3) | |
| C2 | 0.23274 (18) | 0.33848 (16) | 0.91519 (15) | 0.0145 (3) | |
| H2A | 0.3441 | 0.3213 | 0.9524 | 0.017* | |
| C3 | 0.18718 (18) | 0.42060 (16) | 0.79936 (15) | 0.0146 (3) | |
| C4 | 0.02190 (18) | 0.44787 (17) | 0.74524 (15) | 0.0152 (3) | |
| H4A | −0.0053 | 0.5061 | 0.6673 | 0.018* | |
| C5 | −0.10116 (18) | 0.39202 (16) | 0.80289 (15) | 0.0149 (3) | |
| H5A | −0.2123 | 0.4100 | 0.7663 | 0.018* | |
| C6 | −0.05419 (17) | 0.30799 (16) | 0.91746 (14) | 0.0130 (3) | |
| C7 | −0.03154 (17) | 0.17548 (16) | 1.10106 (15) | 0.0134 (3) | |
| C8 | 0.31874 (18) | 0.48006 (17) | 0.73628 (15) | 0.0160 (3) | |
| C9 | 0.39782 (19) | 0.65961 (18) | 0.58856 (17) | 0.0207 (4) | |
| H9A | 0.3987 | 0.5840 | 0.5086 | 0.025* | |
| H9B | 0.5106 | 0.6813 | 0.6582 | 0.025* | |
| C10 | 0.3502 (2) | 0.81088 (19) | 0.53830 (17) | 0.0239 (4) | |
| H10A | 0.4265 | 0.8557 | 0.4888 | 0.036* | |
| H10B | 0.3571 | 0.8873 | 0.6191 | 0.036* | |
| H10C | 0.2357 | 0.7889 | 0.4741 | 0.036* | |
| C11 | −0.32301 (17) | 0.22441 (17) | 0.97243 (15) | 0.0147 (3) | |
| H11A | −0.3564 | 0.3274 | 0.9492 | 0.018* | |
| H11B | −0.3508 | 0.2007 | 1.0589 | 0.018* | |
| C12 | −0.42069 (18) | 0.09446 (17) | 0.85251 (15) | 0.0162 (3) | |
| H12A | −0.5400 | 0.1044 | 0.8252 | 0.019* | |
| H12B | −0.3809 | 0.1103 | 0.7701 | 0.019* | |
| C13 | −0.08488 (18) | 0.09237 (17) | 1.21037 (15) | 0.0158 (3) | |
| H13A | −0.1637 | −0.0071 | 1.1638 | 0.019* | |
| H13B | −0.1456 | 0.1610 | 1.2540 | 0.019* | |
| C14 | 0.05897 (19) | 0.05117 (18) | 1.32650 (16) | 0.0184 (3) | |
| H14A | 0.0130 | −0.0277 | 1.3786 | 0.022* | |
| H14B | 0.1328 | 0.0009 | 1.2827 | 0.022* | |
| C15 | 0.1621 (2) | 0.19530 (19) | 1.43011 (16) | 0.0238 (4) | |
| H15A | 0.2517 | 0.1615 | 1.5019 | 0.036* | |
| H15B | 0.0904 | 0.2445 | 1.4754 | 0.036* | |
| H15C | 0.2107 | 0.2727 | 1.3797 | 0.036* |
| O1 | 0.0174 (5) | 0.0194 (5) | 0.0219 (6) | 0.0049 (4) | 0.0097 (5) | 0.0088 (5) |
| O2 | 0.0174 (6) | 0.0319 (6) | 0.0297 (6) | 0.0102 (5) | 0.0117 (5) | 0.0145 (5) |
| O3 | 0.0151 (6) | 0.0148 (5) | 0.0271 (6) | 0.0033 (4) | 0.0089 (5) | 0.0033 (5) |
| N1 | 0.0115 (6) | 0.0135 (6) | 0.0149 (6) | 0.0026 (5) | 0.0045 (5) | 0.0019 (5) |
| N2 | 0.0145 (6) | 0.0139 (6) | 0.0138 (6) | 0.0036 (5) | 0.0051 (5) | 0.0023 (5) |
| C1 | 0.0146 (7) | 0.0111 (7) | 0.0142 (7) | 0.0036 (6) | 0.0039 (6) | 0.0002 (6) |
| C2 | 0.0116 (7) | 0.0139 (7) | 0.0170 (7) | 0.0035 (6) | 0.0029 (6) | −0.0004 (6) |
| C3 | 0.0154 (7) | 0.0111 (7) | 0.0169 (8) | 0.0016 (6) | 0.0054 (6) | −0.0002 (6) |
| C4 | 0.0182 (8) | 0.0123 (7) | 0.0141 (7) | 0.0034 (6) | 0.0031 (6) | 0.0014 (6) |
| C5 | 0.0123 (7) | 0.0142 (7) | 0.0165 (7) | 0.0037 (6) | 0.0019 (6) | 0.0001 (6) |
| C6 | 0.0141 (7) | 0.0110 (7) | 0.0133 (7) | 0.0012 (6) | 0.0046 (6) | −0.0018 (6) |
| C7 | 0.0159 (7) | 0.0107 (7) | 0.0137 (7) | 0.0033 (6) | 0.0048 (6) | −0.0008 (6) |
| C8 | 0.0176 (8) | 0.0160 (7) | 0.0136 (7) | 0.0026 (6) | 0.0037 (6) | 0.0009 (6) |
| C9 | 0.0197 (8) | 0.0239 (8) | 0.0236 (8) | 0.0036 (7) | 0.0132 (7) | 0.0080 (7) |
| C10 | 0.0257 (9) | 0.0245 (9) | 0.0221 (8) | 0.0019 (7) | 0.0091 (7) | 0.0047 (7) |
| C11 | 0.0112 (7) | 0.0164 (7) | 0.0181 (8) | 0.0047 (6) | 0.0054 (6) | 0.0034 (6) |
| C12 | 0.0127 (7) | 0.0172 (8) | 0.0185 (8) | 0.0029 (6) | 0.0040 (6) | 0.0030 (6) |
| C13 | 0.0169 (8) | 0.0148 (7) | 0.0175 (8) | 0.0027 (6) | 0.0077 (6) | 0.0025 (6) |
| C14 | 0.0215 (8) | 0.0202 (8) | 0.0176 (8) | 0.0074 (6) | 0.0093 (7) | 0.0065 (6) |
| C15 | 0.0210 (8) | 0.0295 (9) | 0.0200 (8) | 0.0041 (7) | 0.0046 (7) | 0.0048 (7) |
| O1—C8 | 1.3471 (17) | C9—C10 | 1.494 (2) |
| O1—C9 | 1.4565 (18) | C9—H9A | 0.9900 |
| O2—C8 | 1.2094 (18) | C9—H9B | 0.9900 |
| O3—C12 | 1.4177 (17) | C10—H10A | 0.9800 |
| O3—H3A | 0.86 (2) | C10—H10B | 0.9800 |
| N1—C7 | 1.3762 (18) | C10—H10C | 0.9800 |
| N1—C6 | 1.3785 (19) | C11—C12 | 1.518 (2) |
| N1—C11 | 1.4653 (18) | C11—H11A | 0.9900 |
| N2—C7 | 1.3202 (18) | C11—H11B | 0.9900 |
| N2—C1 | 1.3937 (18) | C12—H12A | 0.9900 |
| C1—C2 | 1.392 (2) | C12—H12B | 0.9900 |
| C1—C6 | 1.405 (2) | C13—C14 | 1.529 (2) |
| C2—C3 | 1.393 (2) | C13—H13A | 0.9900 |
| C2—H2A | 0.9500 | C13—H13B | 0.9900 |
| C3—C4 | 1.414 (2) | C14—C15 | 1.522 (2) |
| C3—C8 | 1.486 (2) | C14—H14A | 0.9900 |
| C4—C5 | 1.382 (2) | C14—H14B | 0.9900 |
| C4—H4A | 0.9500 | C15—H15A | 0.9800 |
| C5—C6 | 1.394 (2) | C15—H15B | 0.9800 |
| C5—H5A | 0.9500 | C15—H15C | 0.9800 |
| C7—C13 | 1.494 (2) | ||
| C8—O1—C9 | 115.89 (11) | C9—C10—H10A | 109.5 |
| C12—O3—H3A | 111.6 (14) | C9—C10—H10B | 109.5 |
| C7—N1—C6 | 106.93 (11) | H10A—C10—H10B | 109.5 |
| C7—N1—C11 | 127.84 (12) | C9—C10—H10C | 109.5 |
| C6—N1—C11 | 125.05 (12) | H10A—C10—H10C | 109.5 |
| C7—N2—C1 | 105.09 (11) | H10B—C10—H10C | 109.5 |
| C2—C1—N2 | 130.08 (13) | N1—C11—C12 | 111.97 (11) |
| C2—C1—C6 | 120.14 (13) | N1—C11—H11A | 109.2 |
| N2—C1—C6 | 109.77 (12) | C12—C11—H11A | 109.2 |
| C1—C2—C3 | 117.98 (13) | N1—C11—H11B | 109.2 |
| C1—C2—H2A | 121.0 | C12—C11—H11B | 109.2 |
| C3—C2—H2A | 121.0 | H11A—C11—H11B | 107.9 |
| C2—C3—C4 | 120.92 (13) | O3—C12—C11 | 113.35 (12) |
| C2—C3—C8 | 117.67 (13) | O3—C12—H12A | 108.9 |
| C4—C3—C8 | 121.40 (13) | C11—C12—H12A | 108.9 |
| C5—C4—C3 | 121.66 (13) | O3—C12—H12B | 108.9 |
| C5—C4—H4A | 119.2 | C11—C12—H12B | 108.9 |
| C3—C4—H4A | 119.2 | H12A—C12—H12B | 107.7 |
| C4—C5—C6 | 116.73 (13) | C7—C13—C14 | 114.12 (12) |
| C4—C5—H5A | 121.6 | C7—C13—H13A | 108.7 |
| C6—C5—H5A | 121.6 | C14—C13—H13A | 108.7 |
| N1—C6—C5 | 131.94 (13) | C7—C13—H13B | 108.7 |
| N1—C6—C1 | 105.49 (12) | C14—C13—H13B | 108.7 |
| C5—C6—C1 | 122.55 (13) | H13A—C13—H13B | 107.6 |
| N2—C7—N1 | 112.72 (12) | C15—C14—C13 | 113.25 (12) |
| N2—C7—C13 | 125.88 (13) | C15—C14—H14A | 108.9 |
| N1—C7—C13 | 121.40 (12) | C13—C14—H14A | 108.9 |
| O2—C8—O1 | 123.07 (13) | C15—C14—H14B | 108.9 |
| O2—C8—C3 | 124.77 (13) | C13—C14—H14B | 108.9 |
| O1—C8—C3 | 112.16 (12) | H14A—C14—H14B | 107.7 |
| O1—C9—C10 | 107.38 (12) | C14—C15—H15A | 109.5 |
| O1—C9—H9A | 110.2 | C14—C15—H15B | 109.5 |
| C10—C9—H9A | 110.2 | H15A—C15—H15B | 109.5 |
| O1—C9—H9B | 110.2 | C14—C15—H15C | 109.5 |
| C10—C9—H9B | 110.2 | H15A—C15—H15C | 109.5 |
| H9A—C9—H9B | 108.5 | H15B—C15—H15C | 109.5 |
| C7—N2—C1—C2 | 179.98 (14) | C1—N2—C7—N1 | 0.20 (15) |
| C7—N2—C1—C6 | 0.06 (15) | C1—N2—C7—C13 | −179.22 (13) |
| N2—C1—C2—C3 | −179.43 (14) | C6—N1—C7—N2 | −0.39 (15) |
| C6—C1—C2—C3 | 0.5 (2) | C11—N1—C7—N2 | 174.91 (12) |
| C1—C2—C3—C4 | 0.8 (2) | C6—N1—C7—C13 | 179.07 (12) |
| C1—C2—C3—C8 | −179.97 (12) | C11—N1—C7—C13 | −5.6 (2) |
| C2—C3—C4—C5 | −1.2 (2) | C9—O1—C8—O2 | −0.5 (2) |
| C8—C3—C4—C5 | 179.59 (13) | C9—O1—C8—C3 | 178.95 (12) |
| C3—C4—C5—C6 | 0.3 (2) | C2—C3—C8—O2 | 16.6 (2) |
| C7—N1—C6—C5 | −178.15 (14) | C4—C3—C8—O2 | −164.22 (14) |
| C11—N1—C6—C5 | 6.4 (2) | C2—C3—C8—O1 | −162.86 (12) |
| C7—N1—C6—C1 | 0.39 (14) | C4—C3—C8—O1 | 16.34 (19) |
| C11—N1—C6—C1 | −175.07 (12) | C8—O1—C9—C10 | −163.28 (12) |
| C4—C5—C6—N1 | 179.43 (13) | C7—N1—C11—C12 | −98.59 (16) |
| C4—C5—C6—C1 | 1.1 (2) | C6—N1—C11—C12 | 75.92 (16) |
| C2—C1—C6—N1 | 179.78 (12) | N1—C11—C12—O3 | 70.35 (16) |
| N2—C1—C6—N1 | −0.28 (15) | N2—C7—C13—C14 | 7.5 (2) |
| C2—C1—C6—C5 | −1.5 (2) | N1—C7—C13—C14 | −171.87 (12) |
| N2—C1—C6—C5 | 178.43 (12) | C7—C13—C14—C15 | 73.93 (16) |
| H··· | ||||
| O3—H3A···N2i | 0.86 (3) | 1.98 (2) | 2.8047 (17) | 159.6 (17) |
| C11—H11A···O2ii | 0.99 | 2.48 | 3.2901 (19) | 139 |
| C11—H11B···O3iii | 0.99 | 2.46 | 3.2457 (19) | 136 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3 | 0.86 (3) | 1.98 (2) | 2.8047 (17) | 159.6 (17) |
| C11—H11 | 0.99 | 2.48 | 3.2901 (19) | 139 |
Symmetry codes: (i) ; (ii) .