| Literature DB >> 22058740 |
Abstract
In the title mol-ecule, C(13)H(18)ClN(3)O, the piperazine ring has a chair conformation. In the crystal, mol-ecules are linked into chains along [100] by N-H⋯O hydrogen bonds.Entities:
Year: 2011 PMID: 22058740 PMCID: PMC3201470 DOI: 10.1107/S1600536811035331
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H18ClN3O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 1720 reflections |
| θ = 3.2–27.2° | |
| µ = 0.27 mm−1 | |
| Block, colorless | |
| 0.25 × 0.22 × 0.21 mm |
| Bruker SMART CCD diffractometer | 1720 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 27.5°, θmin = 3.1° |
| φ and ω scans | |
| 24955 measured reflections | |
| 3167 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3167 reflections | Δρmax = 0.27 e Å−3 |
| 168 parameters | Δρmin = −0.27 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.021 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.12528 (9) | 0.54490 (8) | 0.41931 (3) | 0.0847 (4) | |
| O1 | 0.14283 (15) | 0.18919 (18) | 0.21930 (6) | 0.0616 (5) | |
| N3 | 0.3536 (2) | 0.2579 (2) | 0.24861 (7) | 0.0514 (6) | |
| C8 | 0.2986 (2) | 0.3286 (2) | 0.28864 (8) | 0.0458 (6) | |
| N2 | 0.34171 (19) | 0.1241 (2) | 0.18146 (8) | 0.0580 (6) | |
| C13 | 0.3594 (2) | 0.3193 (2) | 0.33612 (9) | 0.0542 (6) | |
| H13A | 0.4350 | 0.2671 | 0.3412 | 0.065* | |
| N1 | 0.4083 (2) | 0.1241 (2) | 0.07662 (7) | 0.0644 (7) | |
| C11 | 0.1940 (3) | 0.4637 (2) | 0.36844 (9) | 0.0567 (7) | |
| C12 | 0.3070 (3) | 0.3881 (3) | 0.37613 (9) | 0.0596 (7) | |
| H12A | 0.3482 | 0.3829 | 0.4079 | 0.072* | |
| C10 | 0.1353 (3) | 0.4758 (3) | 0.32123 (10) | 0.0590 (7) | |
| H10A | 0.0605 | 0.5290 | 0.3163 | 0.071* | |
| C7 | 0.2716 (2) | 0.1909 (2) | 0.21612 (8) | 0.0483 (6) | |
| C9 | 0.1878 (2) | 0.4087 (2) | 0.28136 (9) | 0.0547 (6) | |
| H9A | 0.1486 | 0.4173 | 0.2494 | 0.066* | |
| C6 | 0.4827 (3) | 0.2016 (3) | 0.11215 (10) | 0.0652 (7) | |
| H6A | 0.4382 | 0.2815 | 0.1134 | 0.078* | |
| H6B | 0.5782 | 0.2129 | 0.1006 | 0.078* | |
| C4 | 0.2660 (3) | 0.0469 (3) | 0.14571 (9) | 0.0639 (7) | |
| H4A | 0.1702 | 0.0367 | 0.1571 | 0.077* | |
| H4B | 0.3094 | −0.0334 | 0.1443 | 0.077* | |
| C5 | 0.4841 (2) | 0.1467 (3) | 0.16426 (9) | 0.0612 (7) | |
| H5A | 0.5360 | 0.0703 | 0.1638 | 0.073* | |
| H5B | 0.5305 | 0.2023 | 0.1874 | 0.073* | |
| C3 | 0.2667 (3) | 0.1030 (3) | 0.09430 (10) | 0.0707 (8) | |
| H3B | 0.2187 | 0.0490 | 0.0709 | 0.085* | |
| H3C | 0.2164 | 0.1802 | 0.0952 | 0.085* | |
| C2 | 0.4049 (4) | 0.1795 (4) | 0.02561 (12) | 0.0997 (12) | |
| H2A | 0.3649 | 0.2610 | 0.0280 | 0.120* | |
| H2B | 0.3440 | 0.1308 | 0.0042 | 0.120* | |
| C1 | 0.5445 (4) | 0.1884 (5) | 0.00140 (12) | 0.1227 (16) | |
| H1A | 0.5349 | 0.2248 | −0.0314 | 0.184* | |
| H1B | 0.5840 | 0.1079 | −0.0019 | 0.184* | |
| H1C | 0.6048 | 0.2382 | 0.0219 | 0.184* | |
| H3A | 0.435 (3) | 0.236 (2) | 0.2526 (8) | 0.053 (7)* |
| Cl1 | 0.0886 (6) | 0.0831 (6) | 0.0824 (6) | 0.0078 (4) | 0.0226 (4) | −0.0221 (4) |
| O1 | 0.0337 (8) | 0.0846 (14) | 0.0665 (11) | −0.0008 (8) | 0.0028 (7) | −0.0060 (9) |
| N3 | 0.0335 (10) | 0.0646 (14) | 0.0561 (12) | 0.0059 (9) | −0.0007 (8) | −0.0081 (10) |
| C8 | 0.0382 (11) | 0.0471 (14) | 0.0521 (13) | −0.0021 (10) | 0.0039 (9) | 0.0014 (10) |
| N2 | 0.0406 (10) | 0.0713 (16) | 0.0622 (13) | −0.0072 (10) | 0.0060 (9) | −0.0169 (11) |
| C13 | 0.0484 (13) | 0.0530 (16) | 0.0613 (15) | 0.0056 (11) | −0.0028 (11) | 0.0003 (12) |
| N1 | 0.0520 (12) | 0.0864 (18) | 0.0547 (12) | −0.0125 (12) | −0.0010 (9) | −0.0015 (11) |
| C11 | 0.0547 (14) | 0.0511 (16) | 0.0643 (15) | −0.0002 (12) | 0.0145 (12) | −0.0034 (12) |
| C12 | 0.0600 (15) | 0.0637 (18) | 0.0552 (14) | −0.0045 (13) | 0.0019 (11) | −0.0056 (12) |
| C10 | 0.0504 (14) | 0.0499 (16) | 0.0766 (17) | 0.0083 (11) | 0.0075 (12) | 0.0008 (13) |
| C7 | 0.0386 (12) | 0.0567 (15) | 0.0496 (12) | 0.0009 (11) | 0.0008 (10) | 0.0032 (11) |
| C9 | 0.0488 (13) | 0.0554 (16) | 0.0597 (14) | 0.0032 (12) | 0.0002 (11) | 0.0063 (12) |
| C6 | 0.0466 (13) | 0.075 (2) | 0.0737 (16) | −0.0132 (13) | 0.0069 (12) | −0.0094 (15) |
| C4 | 0.0510 (14) | 0.075 (2) | 0.0658 (15) | −0.0186 (13) | 0.0059 (12) | −0.0164 (13) |
| C5 | 0.0380 (12) | 0.084 (2) | 0.0618 (15) | 0.0002 (12) | −0.0005 (11) | −0.0181 (13) |
| C3 | 0.0469 (14) | 0.096 (2) | 0.0691 (17) | −0.0125 (15) | −0.0036 (12) | −0.0090 (16) |
| C2 | 0.083 (2) | 0.144 (4) | 0.072 (2) | −0.015 (2) | −0.0036 (17) | 0.023 (2) |
| C1 | 0.097 (3) | 0.194 (5) | 0.077 (2) | −0.033 (3) | 0.0140 (19) | 0.021 (2) |
| Cl1—C11 | 1.741 (2) | C10—H10A | 0.9300 |
| O1—C7 | 1.233 (3) | C9—H9A | 0.9300 |
| N3—C7 | 1.374 (3) | C6—C5 | 1.504 (4) |
| N3—C8 | 1.413 (3) | C6—H6A | 0.9700 |
| N3—H3A | 0.82 (3) | C6—H6B | 0.9700 |
| C8—C9 | 1.386 (3) | C4—C3 | 1.492 (4) |
| C8—C13 | 1.389 (3) | C4—H4A | 0.9700 |
| N2—C7 | 1.350 (3) | C4—H4B | 0.9700 |
| N2—C5 | 1.456 (3) | C5—H5A | 0.9700 |
| N2—C4 | 1.458 (3) | C5—H5B | 0.9700 |
| C13—C12 | 1.391 (3) | C3—H3B | 0.9700 |
| C13—H13A | 0.9300 | C3—H3C | 0.9700 |
| N1—C3 | 1.450 (3) | C2—C1 | 1.482 (5) |
| N1—C6 | 1.451 (3) | C2—H2A | 0.9700 |
| N1—C2 | 1.480 (4) | C2—H2B | 0.9700 |
| C11—C12 | 1.374 (4) | C1—H1A | 0.9600 |
| C11—C10 | 1.377 (3) | C1—H1B | 0.9600 |
| C12—H12A | 0.9300 | C1—H1C | 0.9600 |
| C10—C9 | 1.379 (3) | ||
| C7—N3—C8 | 123.20 (19) | N1—C6—H6B | 109.3 |
| C7—N3—H3A | 117.5 (17) | C5—C6—H6B | 109.3 |
| C8—N3—H3A | 114.8 (16) | H6A—C6—H6B | 108.0 |
| C9—C8—C13 | 119.4 (2) | N2—C4—C3 | 110.7 (2) |
| C9—C8—N3 | 121.6 (2) | N2—C4—H4A | 109.5 |
| C13—C8—N3 | 118.9 (2) | C3—C4—H4A | 109.5 |
| C7—N2—C5 | 125.8 (2) | N2—C4—H4B | 109.5 |
| C7—N2—C4 | 120.42 (19) | C3—C4—H4B | 109.5 |
| C5—N2—C4 | 111.01 (18) | H4A—C4—H4B | 108.1 |
| C8—C13—C12 | 120.0 (2) | N2—C5—C6 | 110.24 (19) |
| C8—C13—H13A | 120.0 | N2—C5—H5A | 109.6 |
| C12—C13—H13A | 120.0 | C6—C5—H5A | 109.6 |
| C3—N1—C6 | 109.9 (2) | N2—C5—H5B | 109.6 |
| C3—N1—C2 | 109.8 (2) | C6—C5—H5B | 109.6 |
| C6—N1—C2 | 111.4 (2) | H5A—C5—H5B | 108.1 |
| C12—C11—C10 | 120.9 (2) | N1—C3—C4 | 111.3 (2) |
| C12—C11—Cl1 | 119.17 (19) | N1—C3—H3B | 109.4 |
| C10—C11—Cl1 | 120.0 (2) | C4—C3—H3B | 109.4 |
| C11—C12—C13 | 119.6 (2) | N1—C3—H3C | 109.4 |
| C11—C12—H12A | 120.2 | C4—C3—H3C | 109.4 |
| C13—C12—H12A | 120.2 | H3B—C3—H3C | 108.0 |
| C11—C10—C9 | 119.7 (2) | N1—C2—C1 | 113.7 (3) |
| C11—C10—H10A | 120.1 | N1—C2—H2A | 108.8 |
| C9—C10—H10A | 120.1 | C1—C2—H2A | 108.8 |
| O1—C7—N2 | 122.2 (2) | N1—C2—H2B | 108.8 |
| O1—C7—N3 | 122.3 (2) | C1—C2—H2B | 108.8 |
| N2—C7—N3 | 115.43 (19) | H2A—C2—H2B | 107.7 |
| C10—C9—C8 | 120.4 (2) | C2—C1—H1A | 109.5 |
| C10—C9—H9A | 119.8 | C2—C1—H1B | 109.5 |
| C8—C9—H9A | 119.8 | H1A—C1—H1B | 109.5 |
| N1—C6—C5 | 111.5 (2) | C2—C1—H1C | 109.5 |
| N1—C6—H6A | 109.3 | H1A—C1—H1C | 109.5 |
| C5—C6—H6A | 109.3 | H1B—C1—H1C | 109.5 |
| H··· | ||||
| N3—H3A···O1i | 0.82 (3) | 2.18 (3) | 2.986 (3) | 167 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.82 (3) | 2.18 (3) | 2.986 (3) | 167 (2) |
Symmetry code: (i) .