Literature DB >> 22057589

Signal-pair correlation analysis of single-molecule trajectories.

Armin Hoffmann1, Michael T Woodside.   

Abstract

There you go: How to get kinetic information from trajectories of single biomolecules? A method based on correlating signal ranges (here for a three-state DNA hairpin with F = folded, I = intermediate, and U = unfolded state) is reported and shows how to get the kinetic scheme and the corresponding rates, even for states with low occupancy or very short lifetime, states which overlap because of noise, and systems with very similar or very different rates.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2011        PMID: 22057589     DOI: 10.1002/anie.201104033

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  12 in total

1.  Routine and timely sub-picoNewton force stability and precision for biological applications of atomic force microscopy.

Authors:  Allison B Churnside; Ruby May A Sullan; Duc M Nguyen; Sara O Case; Matthew S Bull; Gavin M King; Thomas T Perkins
Journal:  Nano Lett       Date:  2012-06-15       Impact factor: 11.189

2.  Ultrafast folding kinetics and cooperativity of villin headpiece in single-molecule force spectroscopy.

Authors:  Gabriel Žoldák; Johannes Stigler; Benjamin Pelz; Hongbin Li; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-21       Impact factor: 11.205

3.  A transformation for the mechanical fingerprints of complex biomolecular interactions.

Authors:  Yaojun Zhang; Olga K Dudko
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

4.  Reconstructing folding energy landscapes from splitting probability analysis of single-molecule trajectories.

Authors:  Ajay P Manuel; John Lambert; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-26       Impact factor: 11.205

5.  Single-molecule approaches to prion protein misfolding.

Authors:  Hao Yu; Derek R Dee; Michael T Woodside
Journal:  Prion       Date:  2013-01-28       Impact factor: 3.931

6.  Energy landscape analysis of native folding of the prion protein yields the diffusion constant, transition path time, and rates.

Authors:  Hao Yu; Amar Nath Gupta; Xia Liu; Krishna Neupane; Angela M Brigley; Iveta Sosova; Michael T Woodside
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

Review 7.  Reconstructing folding energy landscapes by single-molecule force spectroscopy.

Authors:  Michael T Woodside; Steven M Block
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

8.  Probing Position-Dependent Diffusion in Folding Reactions Using Single-Molecule Force Spectroscopy.

Authors:  Daniel A N Foster; Rafayel Petrosyan; Andrew G T Pyo; Armin Hoffmann; Feng Wang; Michael T Woodside
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

9.  Spectral Rate Theory for Two-State Kinetics.

Authors:  Jan-Hendrik Prinz; John D Chodera; Frank Noé
Journal:  Phys Rev X       Date:  2014-02       Impact factor: 15.762

10.  Diverse metastable structures formed by small oligomers of α-synuclein probed by force spectroscopy.

Authors:  Krishna Neupane; Allison Solanki; Iveta Sosova; Miro Belov; Michael T Woodside
Journal:  PLoS One       Date:  2014-01-24       Impact factor: 3.240

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