Literature DB >> 22045641

Cell cycle dependent TN-C promoter activity determined by live cell imaging.

Michael Halter1, Daniel R Sisan, Joe Chalfoun, Benjamin L Stottrup, Antonio Cardone, Alden A Dima, Alessandro Tona, Anne L Plant, John T Elliott.   

Abstract

The extracellular matrix protein tenascin-C plays a critical role in development, wound healing, and cancer progression, but how it is controlled and how it exerts its physiological responses remain unclear. By quantifying the behavior of live cells with phase contrast and fluorescence microscopy, the dynamic regulation of TN-C promoter activity is examined. We employ an NIH 3T3 cell line stably transfected with the TN-C promoter ligated to the gene sequence for destabilized green fluorescent protein (GFP). Fully automated image analysis routines, validated by comparison with data derived from manual segmentation and tracking of single cells, are used to quantify changes in the cellular GFP in hundreds of individual cells throughout their cell cycle during live cell imaging experiments lasting 62 h. We find that individual cells vary substantially in their expression patterns over the cell cycle, but that on average TN-C promoter activity increases during the last 40% of the cell cycle. We also find that the increase in promoter activity is proportional to the activity earlier in the cell cycle. This work illustrates the application of live cell microscopy and automated image analysis of a promoter-driven GFP reporter cell line to identify subtle gene regulatory mechanisms that are difficult to uncover using population averaged measurements. Published 2011 Wiley-Liss, Inc.

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Year:  2011        PMID: 22045641     DOI: 10.1002/cyto.a.21028

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  8 in total

1.  Predicting rates of cell state change caused by stochastic fluctuations using a data-driven landscape model.

Authors:  Daniel R Sisan; Michael Halter; Joseph B Hubbard; Anne L Plant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-30       Impact factor: 11.205

2.  Automatic segmentation and supervised learning-based selection of nuclei in cancer tissue images.

Authors:  Kaustav Nandy; Prabhakar R Gudla; Ryan Amundsen; Karen J Meaburn; Tom Misteli; Stephen J Lockett
Journal:  Cytometry A       Date:  2012-07-31       Impact factor: 4.355

3.  Lineage mapper: A versatile cell and particle tracker.

Authors:  Joe Chalfoun; Michael Majurski; Alden Dima; Michael Halter; Kiran Bhadriraju; Mary Brady
Journal:  Sci Rep       Date:  2016-11-17       Impact factor: 4.379

4.  The role of fluctuations in determining cellular network thermodynamics.

Authors:  Joseph B Hubbard; Michael Halter; Swarnavo Sarkar; Anne L Plant
Journal:  PLoS One       Date:  2020-03-11       Impact factor: 3.240

5.  Practical application of microsphere samples for benchmarking a quantitative phase imaging system.

Authors:  Edward Kwee; Alexander Peterson; Michael Halter; John Elliott
Journal:  Cytometry A       Date:  2020-12-20       Impact factor: 4.714

6.  Keratin23 (KRT23) knockdown decreases proliferation and affects the DNA damage response of colon cancer cells.

Authors:  Karin Birkenkamp-Demtröder; Stephan A Hahn; Francisco Mansilla; Kasper Thorsen; Abdelouahid Maghnouj; Rikke Christensen; Bodil Øster; Torben Falck Ørntoft
Journal:  PLoS One       Date:  2013-09-09       Impact factor: 3.240

7.  Large-scale time-lapse microscopy of Oct4 expression in human embryonic stem cell colonies.

Authors:  Kiran Bhadriraju; Michael Halter; Julien Amelot; Peter Bajcsy; Joe Chalfoun; Antoine Vandecreme; Barbara S Mallon; Kye-Yoon Park; Subhash Sista; John T Elliott; Anne L Plant
Journal:  Stem Cell Res       Date:  2016-05-22       Impact factor: 2.020

8.  Cell tracking in vitro reveals that the extracellular matrix glycoprotein Tenascin-C modulates cell cycle length and differentiation in neural stem/progenitor cells of the developing mouse spinal cord.

Authors:  Marcus May; Bernd Denecke; Timm Schroeder; Magdalena Götz; Andreas Faissner
Journal:  Biol Open       Date:  2018-07-25       Impact factor: 2.422

  8 in total

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