Literature DB >> 22038974

Whole-genome sequence of Corynebacterium pseudotuberculosis PAT10 strain isolated from sheep in Patagonia, Argentina.

Louise Teixeira Cerdeira1, Anne Cybelle Pinto, Maria Paula Cruz Schneider, Sintia Silva de Almeida, Anderson Rodrigues dos Santos, Eudes Guilherme Vieira Barbosa, Amjad Ali, Maria Silvanira Barbosa, Adriana Ribeiro Carneiro, Rommel Thiago Jucá Ramos, Rodrigo Santos de Oliveira, Debmalya Barh, Neha Barve, Vasudeo Zambare, Silvia Estevão Belchior, Luis Carlos Guimarães, Siomar de Castro Soares, Fernanda Alves Dorella, Flavia Souza Rocha, Vinicius Augusto Carvalho de Abreu, Andreas Tauch, Eva Trost, Anderson Miyoshi, Vasco Azevedo, Artur Silva.   

Abstract

In this work, we report the complete genome sequence of a Corynebacterium pseudotuberculosis PAT10 isolate, collected from a lung abscess in an Argentine sheep in Patagonia, whose pathogen also required an investigation of its pathogenesis. Thus, the analysis of the genome sequence offers a means to better understanding of the molecular and genetic basis of virulence of this bacterium.

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Year:  2011        PMID： 22038974      PMCID： PMC3209231          DOI： 10.1128/JB.06044-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  6 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  InterProScan--an integration platform for the signature-recognition methods in InterPro.

Authors:  E M Zdobnov; R Apweiler
Journal:  Bioinformatics       Date:  2001-09       Impact factor: 6.937

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.

Authors:  Louise Teixeira Cerdeira; Adriana Ribeiro Carneiro; Rommel Thiago Jucá Ramos; Sintia Silva de Almeida; Vivian D'Afonseca; Maria Paula Cruz Schneider; Jan Baumbach; Andreas Tauch; John Anthony McCulloch; Vasco Ariston Carvalho Azevedo; Artur Silva
Journal:  J Microbiol Methods       Date:  2011-05-18       Impact factor: 2.363

Review 5.  Corynebacterium pseudotuberculosis: microbiology, biochemical properties, pathogenesis and molecular studies of virulence.

Authors:  Fernanda Alves Dorella; Luis Gustavo Carvalho Pacheco; Sergio Costa Oliveira; Anderson Miyoshi; Vasco Azevedo
Journal:  Vet Res       Date:  2006 Mar-Apr       Impact factor: 3.683

6.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  6 in total
  7 in total

1.  Evaluation of ERIC-PCR as genotyping method for Corynebacterium pseudotuberculosis isolates.

Authors:  Elaine M S Dorneles; Jordana A Santana; Dayana Ribeiro; Fernanda Alves Dorella; Alessandro S Guimarães; Mohamed S Moawad; Salah A Selim; Ana Luiza M Garaldi; Anderson Miyoshi; Márcio G Ribeiro; Aurora M G Gouveia; Vasco Azevedo; Marcos B Heinemann; Andrey P Lage
Journal:  PLoS One       Date:  2014-06-05       Impact factor: 3.240

2.  Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution.

Authors:  Biao Wang; Robert Ekblom; Ignas Bunikis; Heli Siitari; Jacob Höglund
Journal:  BMC Genomics       Date:  2014-03-06       Impact factor: 3.969

3.  In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks.

Authors:  Edson Luiz Folador; Paulo Vinícius Sanches Daltro de Carvalho; Wanderson Marques Silva; Rafaela Salgado Ferreira; Artur Silva; Michael Gromiha; Preetam Ghosh; Debmalya Barh; Vasco Azevedo; Richard Röttger
Journal:  BMC Syst Biol       Date:  2016-11-04

4.  Exploration of Nitrate Reductase Metabolic Pathway in Corynebacterium pseudotuberculosis.

Authors:  Sintia Almeida; Cassiana Sousa; Vinícius Abreu; Carlos Diniz; Elaine M S Dorneles; Andrey P Lage; Debmalya Barh; Vasco Azevedo
Journal:  Int J Genomics       Date:  2017-02-20       Impact factor: 2.326

5.  Cell envelope of corynebacteria: structure and influence on pathogenicity.

Authors:  Andreas Burkovski
Journal:  ISRN Microbiol       Date:  2013-01-21

6.  The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.

Authors:  Siomar C Soares; Artur Silva; Eva Trost; Jochen Blom; Rommel Ramos; Adriana Carneiro; Amjad Ali; Anderson R Santos; Anne C Pinto; Carlos Diniz; Eudes G V Barbosa; Fernanda A Dorella; Flávia Aburjaile; Flávia S Rocha; Karina K F Nascimento; Luís C Guimarães; Sintia Almeida; Syed S Hassan; Syeda M Bakhtiar; Ulisses P Pereira; Vinicius A C Abreu; Maria P C Schneider; Anderson Miyoshi; Andreas Tauch; Vasco Azevedo
Journal:  PLoS One       Date:  2013-01-14       Impact factor: 3.240

7.  Corynebacterium pseudotuberculosis Pneumonia in a Veterinary Student Infected During Laboratory Work.

Authors:  Lars Heggelund; Peter Gaustad; Othilde Elise Håvelsrud; Jochen Blom; Lars Borgen; Arve Sundset; Henning Sørum; Stig Sophus Frøland
Journal:  Open Forum Infect Dis       Date:  2015-04-15       Impact factor: 3.835
  7 in total

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