Literature DB >> 22038968

Draft genome of Streptomyces zinciresistens K42, a novel metal-resistant species isolated from copper-zinc mine tailings.

Yanbing Lin1, Xiuli Hao, Laurel Johnstone, Susan J Miller, David A Baltrus, Christopher Rensing, Gehong Wei.   

Abstract

A draft genome sequence of Streptomyces zinciresistens K42, a novel Streptomyces species displaying a high level of resistance to zinc and cadmium, is presented here. The genome contains a large number of genes encoding proteins predicted to be involved in conferring metal resistance. Many of these genes appear to have been acquired through horizontal gene transfer.

Entities:  

Mesh：

Substances：

Year:  2011        PMID： 22038968      PMCID： PMC3209202          DOI： 10.1128/JB.06165-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

1.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

5.  Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.

Authors:  S Omura; H Ikeda; J Ishikawa; A Hanamoto; C Takahashi; M Shinose; Y Takahashi; H Horikawa; H Nakazawa; T Osonoe; H Kikuchi; T Shiba; Y Sakaki; M Hattori
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

6.  Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete.

Authors:  Kirk J Grubbs; Peter H W Biedermann; Garret Suen; Sandra M Adams; Joseph A Moeller; Jonathan L Klassen; Lynne A Goodwin; Tanja Woyke; A Christine Munk; David Bruce; Chris Detter; Roxanne Tapia; Cliff S Han; Cameron R Currie
Journal:  J Bacteriol       Date:  2011-04-01       Impact factor: 3.490

7.  Identification of dominant bacterial phylotypes in a cadmium-treated forest soil.

Authors:  Anna Lazzaro; Franco Widmer; Christoph Sperisen; Beat Frey
Journal:  FEMS Microbiol Ecol       Date:  2007-12-18       Impact factor: 4.194

8.  Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.

Authors:  Yasuo Ohnishi; Jun Ishikawa; Hirofumi Hara; Hirokazu Suzuki; Miwa Ikenoya; Haruo Ikeda; Atsushi Yamashita; Masahira Hattori; Sueharu Horinouchi
Journal:  J Bacteriol       Date:  2008-03-28       Impact factor: 3.490

9.  Identification of ion-selectivity determinants in heavy-metal transport P1B-type ATPases.

Authors:  J M Argüello
Journal:  J Membr Biol       Date:  2003-09-15       Impact factor: 1.843

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
View more
  3 in total

1.  -Genomic data mining of the marine actinobacteria Streptomyces sp. H-KF8 unveils insights into multi-stress related genes and metabolic pathways involved in antimicrobial synthesis.

Authors:  Agustina Undabarrena; Juan A Ugalde; Michael Seeger; Beatriz Cámara
Journal:  PeerJ       Date:  2017-02-14       Impact factor: 2.984

2.  Evolutionary Trajectories for the Functional Diversification of Anthracycline Methyltransferases.

Authors:  Thadée Grocholski; Keith Yamada; Jari Sinkkonen; Heli Tirkkonen; Jarmo Niemi; Mikko Metsä-Ketelä
Journal:  ACS Chem Biol       Date:  2019-04-23       Impact factor: 5.100

3.  The genome sequence of Streptomyces lividans 66 reveals a novel tRNA-dependent peptide biosynthetic system within a metal-related genomic island.

Authors:  Pablo Cruz-Morales; Erik Vijgenboom; Fernanda Iruegas-Bocardo; Geneviève Girard; Luis Alfonso Yáñez-Guerra; Hilda E Ramos-Aboites; Jean-Luc Pernodet; Jozef Anné; Gilles P van Wezel; Francisco Barona-Gómez
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.