Literature DB >> 22038963

Genome sequence of the thermophilic strain Bacillus coagulans XZL4, an efficient pentose-utilizing producer of chemicals.

Fei Su1, Ke Xu, Bo Zhao, Cui Tai, Fei Tao, Hongzhi Tang, Ping Xu.   

Abstract

Bacillus coagulans XZL4 is an efficient pentose-utilizing producer of important platform compounds, such as l-lactic acid, 2,3-butanediol, and acetoin. Here we present a 2.8-Mb assembly of its genome. Simple and efficient carbohydrate metabolism systems, especially the transketolase/transaldolase pathway, make it possible to convert pentose sugars to products at high levels.

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Year:  2011        PMID： 22038963      PMCID： PMC3209230          DOI： 10.1128/JB.06157-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Mode of action of AraR, the key regulator of L-arabinose metabolism in Bacillus subtilis.

Authors:  L J Mota; P Tavares; I Sá-Nogueira
Journal:  Mol Microbiol       Date:  1999-08       Impact factor: 3.501

2.  Factors affecting the fermentative lactic acid production from renewable resources(1).

Authors: 
Journal:  Enzyme Microb Technol       Date:  2000-02-01       Impact factor: 3.493

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

Review 4.  Genomics of cellulosic biofuels.

Authors:  Edward M Rubin
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

5.  Computation with the KEGG pathway database.

Authors:  H Ogata; S Goto; W Fujibuchi; M Kanehisa
Journal:  Biosystems       Date:  1998 Jun-Jul       Impact factor: 1.973

Review 6.  Microbial 2,3-butanediol production: a state-of-the-art review.

Authors:  Xiao-Jun Ji; He Huang; Ping-Kai Ouyang
Journal:  Biotechnol Adv       Date:  2011-01-24       Impact factor: 14.227

7.  Isolation and characterization of acid-tolerant, thermophilic bacteria for effective fermentation of biomass-derived sugars to lactic acid.

Authors:  Milind A Patel; Mark S Ou; Roberta Harbrucker; Henry C Aldrich; Marian L Buszko; Lonnie O Ingram; K T Shanmugam
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  The COG database: an updated version includes eukaryotes.

Authors:  Roman L Tatusov; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Boris Kiryutin; Eugene V Koonin; Dmitri M Krylov; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Sergei Smirnov; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  BMC Bioinformatics       Date:  2003-09-11       Impact factor: 3.169
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  7 in total

1.  Draft Genome Sequence of Bacillus coagulans GBI-30, 6086, a Widely Used Spore-Forming Probiotic Strain.

Authors:  Luigi Orrù; Elisa Salvetti; Luigi Cattivelli; Antonella Lamontanara; Vania Michelotti; Vittorio Capozzi; Giuseppe Spano; David Keller; Howard Cash; Alessia Martina; Sandra Torriani; Giovanna E Felis
Journal:  Genome Announc       Date:  2014-11-06

2.  Genome Sequences of Two Morphologically Distinct and Thermophilic Bacillus coagulans Strains, H-1 and XZL9.

Authors:  Ke Xu; Fei Su; Fei Tao; Chao Li; Jun Ni; Ping Xu
Journal:  Genome Announc       Date:  2013-05-16

3.  Functional analysis of the ComK protein of Bacillus coagulans.

Authors:  Ákos T Kovács; Tom H Eckhardt; Mariska van Hartskamp; Richard van Kranenburg; Oscar P Kuipers
Journal:  PLoS One       Date:  2013-01-03       Impact factor: 3.240

4.  Redundancy and modularity in membrane-associated dissimilatory nitrate reduction in Bacillus.

Authors:  Kim Heylen; Jan Keltjens
Journal:  Front Microbiol       Date:  2012-10-18       Impact factor: 5.640

5.  Efficient production of polymer-grade L-lactic acid from corn stover hydrolyzate by thermophilic Bacillus sp. strain XZL4.

Authors:  Zhangwei Xue; Limin Wang; Jiansong Ju; Bo Yu; Ping Xu; Yanhe Ma
Journal:  Springerplus       Date:  2012-10-29

6.  Genomic analysis of thermophilic Bacillus coagulans strains: efficient producers for platform bio-chemicals.

Authors:  Fei Su; Ping Xu
Journal:  Sci Rep       Date:  2014-01-29       Impact factor: 4.379

7.  Genome Sequence of Thermophilic Bacillus licheniformis Strain 3F-3, an Efficient Pentose-Utilizing Producer of 2,3-Butanediol.

Authors:  Lixiang Li; Yu Wang; Kai Wang; Kun Li; Cuiqing Ma; Ping Xu
Journal:  Genome Announc       Date:  2014-06-26
  7 in total

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