Literature DB >> 22038177

A call to arms for systematists: revitalising the purpose and practises underpinning the description of novel microbial taxa.

Iain C Sutcliffe1, Martha E Trujillo, Michael Goodfellow.   

Abstract

Prokaryotic systematics is a fundamentally important discipline that provides a framework for the activities of all microbiologists. Here we propose that the field has become mired in a sea of perceived rules and regulations, many of which stipulate what is considered 'sufficient' for the phenotypic characterisation of novel prokaryotic taxa. Importantly, we argue also that the principles and practise of prokaryotic systematics have not yet fully embraced the revolution in biological understanding that has occurred through the availability of huge numbers of whole genome sequences. We therefore propose that a significant reappraisal of the procedures used to describe novel prokaryotic taxa is needed, including the likely introduction of new publication formats. Urgent action is needed to revitalise the practise of prokaryotic systematics in order to maintain this discipline as an attractive career choice for twenty first century life scientists.

Mesh:

Year:  2011        PMID: 22038177     DOI: 10.1007/s10482-011-9664-0

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  17 in total

1.  Genome-Based Taxonomic Classification of the Phylum Actinobacteria.

Authors:  Imen Nouioui; Lorena Carro; Marina García-López; Jan P Meier-Kolthoff; Tanja Woyke; Nikos C Kyrpides; Rüdiger Pukall; Hans-Peter Klenk; Michael Goodfellow; Markus Göker
Journal:  Front Microbiol       Date:  2018-08-22       Impact factor: 5.640

2.  Identification and Characterization of Mycobacterial Species Using Whole-Genome Sequences.

Authors:  Marco A Riojas; Andrew M Frank; Samuel R Greenfield; Stephen P King; Conor J Meehan; Michael Strong; Alice R Wattam; Manzour Hernando Hazbón
Journal:  Methods Mol Biol       Date:  2021

3.  It is time for a new type of type to facilitate naming the microbial world.

Authors:  M Palmer; I Sutcliffe; S N Venter; B P Hedlund
Journal:  New Microbes New Infect       Date:  2022-06-01

4.  Challenging the anthropocentric emphasis on phenotypic testing in prokaryotic species descriptions: rip it up and start again.

Authors:  Iain C Sutcliffe
Journal:  Front Genet       Date:  2015-06-17       Impact factor: 4.599

5.  Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes.

Authors:  James R Doroghazi; William W Metcalf
Journal:  BMC Genomics       Date:  2013-09-11       Impact factor: 3.969

6.  A novel taxonomic marker that discriminates between morphologically complex actinomycetes.

Authors:  Geneviève Girard; Bjørn A Traag; Vartul Sangal; Nadine Mascini; Paul A Hoskisson; Michael Goodfellow; Gilles P van Wezel
Journal:  Open Biol       Date:  2013-10-23       Impact factor: 6.411

7.  Next-generation systematics: An innovative approach to resolve the structure of complex prokaryotic taxa.

Authors:  Vartul Sangal; Michael Goodfellow; Amanda L Jones; Edward C Schwalbe; Jochen Blom; Paul A Hoskisson; Iain C Sutcliffe
Journal:  Sci Rep       Date:  2016-12-07       Impact factor: 4.379

8.  Reclassification of Paenibacillus riograndensis as a Genomovar of Paenibacillus sonchi: Genome-Based Metrics Improve Bacterial Taxonomic Classification.

Authors:  Fernando H Sant'Anna; Adriana Ambrosini; Rocheli de Souza; Gabriela de Carvalho Fernandes; Evelise Bach; Eduardo Balsanelli; Valter Baura; Luciana F Brito; Volker F Wendisch; Fábio de Oliveira Pedrosa; Emanuel M de Souza; Luciane M P Passaglia
Journal:  Front Microbiol       Date:  2017-10-04       Impact factor: 5.640

9.  Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.

Authors:  Lorena Carro; Imen Nouioui; Vartul Sangal; Jan P Meier-Kolthoff; Martha E Trujillo; Maria Del Carmen Montero-Calasanz; Nevzat Sahin; Darren Lee Smith; Kristi E Kim; Paul Peluso; Shweta Deshpande; Tanja Woyke; Nicole Shapiro; Nikos C Kyrpides; Hans-Peter Klenk; Markus Göker; Michael Goodfellow
Journal:  Sci Rep       Date:  2018-01-11       Impact factor: 4.379

10.  Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae.

Authors:  Maria Del Carmen Montero-Calasanz; Jan P Meier-Kolthoff; Dao-Feng Zhang; Adnan Yaramis; Manfred Rohde; Tanja Woyke; Nikos C Kyrpides; Peter Schumann; Wen-Jun Li; Markus Göker
Journal:  Front Microbiol       Date:  2017-12-19       Impact factor: 5.640

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