Literature DB >> 22024648

Schistosoma comparative genomics: integrating genome structure, parasite biology and anthelmintic discovery.

Martin T Swain1, Denis M Larkin, Conor R Caffrey, Stephen J Davies, Alex Loukas, Patrick J Skelly, Karl F Hoffmann.   

Abstract

Schistosoma genomes provide a comprehensive resource for identifying the molecular processes that shape parasite evolution and for discovering novel chemotherapeutic or immunoprophylactic targets. Here, we demonstrate how intragenus and intergenus comparative genomics can be used to drive these investigations forward, illustrate the advantages and limitations of these approaches and review how post-genomic technologies offer complementary strategies for genome characterisation. Although sequencing and functional characterisation of other schistosome/platyhelminth genomes continues to expedite anthelmintic discovery, we contend that future priorities should equally focus on improving assembly quality, and chromosomal assignment, of existing schistosome/platyhelminth genomes.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22024648      PMCID: PMC3223292          DOI: 10.1016/j.pt.2011.09.003

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  93 in total

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3.  Schistosome genomes: a wealth of information.

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Journal:  Trends Parasitol       Date:  2010-01-18

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Journal:  PLoS Pathog       Date:  2010-06-03       Impact factor: 6.823

6.  RNA interference in Schistosoma mansoni schistosomula: selectivity, sensitivity and operation for larger-scale screening.

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Journal:  PLoS Negl Trop Dis       Date:  2010-10-19

Review 7.  Genomic-scale prioritization of drug targets: the TDR Targets database.

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8.  A multidimensional strategy to detect polypharmacological targets in the absence of structural and sequence homology.

Authors:  Jacob D Durrant; Rommie E Amaro; Lei Xie; Michael D Urbaniak; Michael A J Ferguson; Antti Haapalainen; Zhijun Chen; Anne Marie Di Guilmi; Frank Wunder; Philip E Bourne; J Andrew McCammon
Journal:  PLoS Comput Biol       Date:  2010-01-22       Impact factor: 4.475

9.  Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation.

Authors:  Claire Lemaitre; Lamia Zaghloul; Marie-France Sagot; Christian Gautier; Alain Arneodo; Eric Tannier; Benjamin Audit
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  16 in total

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Authors:  Makedonka Mitreva
Journal:  Nat Genet       Date:  2012-01-27       Impact factor: 38.330

Review 2.  Redox-assisted protein folding systems in eukaryotic parasites.

Authors:  Saikh Jaharul Haque; Tanmay Majumdar; Sailen Barik
Journal:  Antioxid Redox Signal       Date:  2012-01-10       Impact factor: 8.401

3.  Excretion/secretion products from Schistosoma mansoni adults, eggs and schistosomula have unique peptidase specificity profiles.

Authors:  Jan Dvořák; Pavla Fajtová; Lenka Ulrychová; Adrian Leontovyč; Liliana Rojo-Arreola; Brian M Suzuki; Martin Horn; Michael Mareš; Charles S Craik; Conor R Caffrey; Anthony J O'Donoghue
Journal:  Biochimie       Date:  2015-09-26       Impact factor: 4.079

Review 4.  New approaches for understanding mechanisms of drug resistance in schistosomes.

Authors:  Robert M Greenberg
Journal:  Parasitology       Date:  2013-04-03       Impact factor: 3.234

Review 5.  New research tools for urogenital schistosomiasis.

Authors:  Gabriel Rinaldi; Neil D Young; Jared D Honeycutt; Paul J Brindley; Robin B Gasser; Michael H Hsieh
Journal:  J Infect Dis       Date:  2014-09-19       Impact factor: 5.226

6.  Large CRISPR-Cas-induced deletions in the oxamniquine resistance locus of the human parasite Schistosoma mansoni.

Authors:  Geetha Sankaranarayanan; Avril Coghlan; Patrick Driguez; Magda E Lotkowska; Mandy Sanders; Nancy Holroyd; Alan Tracey; Matthew Berriman; Gabriel Rinaldi
Journal:  Wellcome Open Res       Date:  2021-01-20

Review 7.  Platyhelminth Venom Allergen-Like (VAL) proteins: revealing structural diversity, class-specific features and biological associations across the phylum.

Authors:  Iain W Chalmers; Karl F Hoffmann
Journal:  Parasitology       Date:  2012-05-02       Impact factor: 3.234

8.  The Schistosoma mansoni phylome: using evolutionary genomics to gain insight into a parasite's biology.

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Journal:  BMC Genomics       Date:  2012-11-13       Impact factor: 3.969

9.  Cytosine methylation is a conserved epigenetic feature found throughout the phylum Platyhelminthes.

Authors:  Kathrin K Geyer; Iain W Chalmers; Neil Mackintosh; Julie E Hirst; Rory Geoghegan; Mathieu Badets; Peter M Brophy; Klaus Brehm; Karl F Hoffmann
Journal:  BMC Genomics       Date:  2013-07-09       Impact factor: 3.969

10.  New frontiers in schistosoma genomics and transcriptomics.

Authors:  Laila A Nahum; Marina M Mourão; Guilherme Oliveira
Journal:  J Parasitol Res       Date:  2012-11-21
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