Literature DB >> 22024215

Making every SAR point count: the development of Chemistry Connect for the large-scale integration of structure and bioactivity data.

Sorel Muresan1, Plamen Petrov, Christopher Southan, Magnus J Kjellberg, Thierry Kogej, Christian Tyrchan, Peter Varkonyi, Paul Hongxing Xie.   

Abstract

The increase in drug research output from patent applications, together with the expansion of public data collections, such as ChEMBL and PubChem BioAssay, has made it essential for pharmaceutical companies to integrate both internal and external 'SAR estate'. The AstraZeneca response has been the development of an enterprise application, Chemistry Connect, containing 45 million unique chemical structures from 18 internal and external data sources. It includes merged compound-to-assay-to-result-to-target relationships extracted from patents, papers and internal data. Users can explore connections between these by searching using drug names or synonyms, chemical structures, patent numbers and target protein identifiers at a scale not previously available.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22024215     DOI: 10.1016/j.drudis.2011.10.005

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  27 in total

1.  QSAR Modeling Using Large-Scale Databases: Case Study for HIV-1 Reverse Transcriptase Inhibitors.

Authors:  Olga A Tarasova; Aleksandra F Urusova; Dmitry A Filimonov; Marc C Nicklaus; Alexey V Zakharov; Vladimir V Poroikov
Journal:  J Chem Inf Model       Date:  2015-06-29       Impact factor: 4.956

2.  Recognition of chemical entities: combining dictionary-based and grammar-based approaches.

Authors:  Saber A Akhondi; Kristina M Hettne; Eelke van der Horst; Erik M van Mulligen; Jan A Kors
Journal:  J Cheminform       Date:  2015-01-19       Impact factor: 5.514

3.  Many InChIs and quite some feat.

Authors:  Wendy A Warr
Journal:  J Comput Aided Mol Des       Date:  2015-06-17       Impact factor: 3.686

4.  Creation of Novel Cores for β-Secretase (BACE-1) Inhibitors: A Multiparameter Lead Generation Strategy.

Authors:  Jenny Viklund; Karin Kolmodin; Gunnar Nordvall; Britt-Marie Swahn; Mats Svensson; Ylva Gravenfors; Fredrik Rahm
Journal:  ACS Med Chem Lett       Date:  2014-02-03       Impact factor: 4.345

Review 5.  An Overview of the Challenges in Designing, Integrating, and Delivering BARD: A Public Chemical-Biology Resource and Query Portal for Multiple Organizations, Locations, and Disciplines.

Authors:  Andrea de Souza; Joshua A Bittker; David L Lahr; Steve Brudz; Simon Chatwin; Tudor I Oprea; Anna Waller; Jeremy J Yang; Noel Southall; Rajarshi Guha; Stephan C Schürer; Uma D Vempati; Mark R Southern; Eric S Dawson; Paul A Clemons; Thomas D Y Chung
Journal:  J Biomol Screen       Date:  2014-01-17

Review 6.  Reporting biological assay screening results for maximum impact.

Authors:  Evan Bolton
Journal:  Drug Discov Today Technol       Date:  2015-05-02

7.  Ranking-Oriented Quantitative Structure-Activity Relationship Modeling Combined with Assay-Wise Data Integration.

Authors:  Katsuhisa Matsumoto; Tomoyuki Miyao; Kimito Funatsu
Journal:  ACS Omega       Date:  2021-04-28

8.  Consistency of systematic chemical identifiers within and between small-molecule databases.

Authors:  Saber A Akhondi; Jan A Kors; Sorel Muresan
Journal:  J Cheminform       Date:  2012-12-13       Impact factor: 5.514

9.  SARConnect: A Tool to Interrogate the Connectivity Between Proteins, Chemical Structures and Activity Data.

Authors:  Mats Eriksson; Ingemar Nilsson; Thierry Kogej; Christopher Southan; Martin Johansson; Christian Tyrchan; Sorel Muresan; Niklas Blomberg; Marcus Bjäreland
Journal:  Mol Inform       Date:  2012-08-07       Impact factor: 3.353

10.  InChI in the wild: an assessment of InChIKey searching in Google.

Authors:  Christopher Southan
Journal:  J Cheminform       Date:  2013-02-11       Impact factor: 5.514

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