Literature DB >> 26194585

Reporting biological assay screening results for maximum impact.

Evan Bolton1.   

Abstract

A very large corpus of biological assay screening results exist in the public domain. The ability to compare and analyze this data is hampered due to missing details and lack of a commonly used terminology to describe assay protocols and assay endpoints. Minimum reporting guidelines exist that, if followed, would greatly enhance the utility of biological assay screening data so it may be independently reproduced, readily integrated, effectively compared, and rapidly analyzed. Published by Elsevier Ltd.

Entities:  

Mesh：

Year:  2015        PMID： 26194585      PMCID： PMC4510462          DOI： 10.1016/j.ddtec.2015.03.004

Source DB:  PubMed          Journal:  Drug Discov Today Technol        ISSN： 1740-6749


  23 in total

1.  Reporting data from high-throughput screening of small-molecule libraries.

Authors:  James Inglese; Caroline E Shamu; R Kiplin Guy
Journal:  Nat Chem Biol       Date:  2007-08       Impact factor: 15.040

2.  BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types.

Authors:  E A Howe; A de Souza; D L Lahr; S Chatwin; P Montgomery; B R Alexander; D-T Nguyen; Y Cruz; D A Stonich; G Walzer; J T Rose; S C Picard; Z Liu; J N Rose; X Xiang; J Asiedu; D Durkin; J Levine; J J Yang; S C Schürer; J C Braisted; N Southall; M R Southern; T D Y Chung; S Brudz; C Tanega; S L Schreiber; J A Bittker; R Guha; P A Clemons
Journal:  Nucleic Acids Res       Date:  2014-12-04       Impact factor: 16.971

3.  BioAssay ontology annotations facilitate cross-analysis of diverse high-throughput screening data sets.

Authors:  Stephan C Schürer; Uma Vempati; Robin Smith; Mark Southern; Vance Lemmon
Journal:  J Biomol Screen       Date:  2011-04

4.  Using the BioAssay Ontology for analyzing high-throughput screening data.

Authors:  Linda Zander Balderud; David Murray; Niklas Larsson; Uma Vempati; Stephan C Schürer; Marcus Bjäreland; Ola Engkvist
Journal:  J Biomol Screen       Date:  2014-12-15

Review 5.  Minimum information about a bioactive entity (MIABE).

Authors:  Sandra Orchard; Bissan Al-Lazikani; Steve Bryant; Dominic Clark; Elizabeth Calder; Ian Dix; Ola Engkvist; Mark Forster; Anna Gaulton; Michael Gilson; Robert Glen; Martin Grigorov; Kim Hammond-Kosack; Lee Harland; Andrew Hopkins; Christopher Larminie; Nick Lynch; Romeena K Mann; Peter Murray-Rust; Elena Lo Piparo; Christopher Southan; Christoph Steinbeck; David Wishart; Henning Hermjakob; John Overington; Janet Thornton
Journal:  Nat Rev Drug Discov       Date:  2011-08-31       Impact factor: 84.694

6.  Modeling biomedical experimental processes with OBI.

Authors:  Ryan R Brinkman; Mélanie Courtot; Dirk Derom; Jennifer M Fostel; Yongqun He; Phillip Lord; James Malone; Helen Parkinson; Bjoern Peters; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Larisa N Soldatova; Christian J Stoeckert; Jessica A Turner; Jie Zheng
Journal:  J Biomed Semantics       Date:  2010-06-22

7.  PubChem's BioAssay Database.

Authors:  Yanli Wang; Jewen Xiao; Tugba O Suzek; Jian Zhang; Jiyao Wang; Zhigang Zhou; Lianyi Han; Karen Karapetyan; Svetlana Dracheva; Benjamin A Shoemaker; Evan Bolton; Asta Gindulyte; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

8.  The application of the open pharmacological concepts triple store (open PHACTS) to support drug discovery research.

Authors:  Joseline Ratnam; Barbara Zdrazil; Daniela Digles; Emiliano Cuadrado-Rodriguez; Jean-Marc Neefs; Hannah Tipney; Ronald Siebes; Andra Waagmeester; Glyn Bradley; Chau Han Chau; Lars Richter; Jose Brea; Chris T Evelo; Edgar Jacoby; Stefan Senger; Maria Isabel Loza; Gerhard F Ecker; Christine Chichester
Journal:  PLoS One       Date:  2014-12-18       Impact factor: 3.240

9.  Formalization, annotation and analysis of diverse drug and probe screening assay datasets using the BioAssay Ontology (BAO).

Authors:  Uma D Vempati; Magdalena J Przydzial; Caty Chung; Saminda Abeyruwan; Ahsan Mir; Kunie Sakurai; Ubbo Visser; Vance P Lemmon; Stephan C Schürer
Journal:  PLoS One       Date:  2012-11-14       Impact factor: 3.240

10.  PubChem BioAssay: 2014 update.

Authors:  Yanli Wang; Tugba Suzek; Jian Zhang; Jiyao Wang; Siqian He; Tiejun Cheng; Benjamin A Shoemaker; Asta Gindulyte; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2013-11-05       Impact factor: 16.971
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