Literature DB >> 22024020

Determinants of tRNA editing and modification: avoiding conundrums, affecting function.

Zdeněk Paris1, Ian M C Fleming, Juan D Alfonzo.   

Abstract

In all organisms tRNAs play the essential role of connecting the genetic information found in DNA with the protein synthesis machinery ensuring fidelity during translation. Following transcription tRNAs undergo a number of processing events including numerous post-transcriptional modifications that render a tRNA molecule fully functional. The effects of some modifications go beyond simply affecting tRNA structure and can alter the meaning of the tRNA. This review will summarize the current state of the tRNA editing field, highlighting how editing affects tRNA structure and function in various organisms. It will also discuss recent data that hints at connections between editing and modification that may be exploited by cells to modulate a tRNA's role in translation.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID： 22024020      PMCID： PMC3345058          DOI： 10.1016/j.semcdb.2011.10.009

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN： 1084-9521            Impact factor:   7.727


  60 in total

1.  2'-O-methylation and inosine formation in the wobble position of anticodon-substituted tRNA-Phe in a homologous yeast in vitro system.

Authors:  L Droogmans; H Grosjean
Journal:  Biochimie       Date:  1991 Jul-Aug       Impact factor: 4.079

Review 2.  Genetic dissection of synthesis and function of modified nucleosides in bacterial transfer RNA.

Authors:  G R Björk
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1995

3.  Transfer RNA editing in land snail mitochondria.

Authors:  S Yokobori; S Pääbo
Journal:  Proc Natl Acad Sci U S A       Date:  1995-10-24       Impact factor: 11.205

4.  Editing of a tRNA anticodon in marsupial mitochondria changes its codon recognition.

Authors:  A Janke; S Pääbo
Journal:  Nucleic Acids Res       Date:  1993-04-11       Impact factor: 16.971

5.  Editing of transfer RNAs in Acanthamoeba castellanii mitochondria.

Authors:  K M Lonergan; M W Gray
Journal:  Science       Date:  1993-02-05       Impact factor: 47.728

6.  Predicted editing of additional transfer RNAs in Acanthamoeba castellanii mitochondria.

Authors:  K M Lonergan; M W Gray
Journal:  Nucleic Acids Res       Date:  1993-09-11       Impact factor: 16.971

7.  RNA editing of tRNA(Phe) and tRNA(Cys) in mitochondria of Oenothera berteriana is initiated in precursor molecules.

Authors:  S Binder; A Marchfelder; A Brennicke
Journal:  Mol Gen Genet       Date:  1994-07-08

8.  A single zinc ion is sufficient for an active Trypanosoma brucei tRNA editing deaminase.

Authors:  Jessica L Spears; Mary Anne T Rubio; Kirk W Gaston; Ewa Wywial; Alexandros Strikoudis; Janusz M Bujnicki; F Nina Papavasiliou; Juan D Alfonzo
Journal:  J Biol Chem       Date:  2011-04-20       Impact factor: 5.157

9.  A novel enzymatic pathway leading to 1-methylinosine modification in Haloferax volcanii tRNA.

Authors:  H Grosjean; F Constantinesco; D Foiret; N Benachenhou
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

10.  C to U editing and modifications during the maturation of the mitochondrial tRNA(Asp) in marsupials.

Authors:  M Mörl; M Dörner; S Pääbo
Journal:  Nucleic Acids Res       Date:  1995-09-11       Impact factor: 16.971
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  13 in total

Review 1.  Parallel Evolution and Lineage-Specific Expansion of RNA Editing in Ctenophores.

Authors:  Andrea B Kohn; Rachel S Sanford; Masa-aki Yoshida; Leonid L Moroz
Journal:  Integr Comp Biol       Date:  2015-06-18       Impact factor: 3.326

2.  The absence of A-to-I editing in the anticodon of plant cytoplasmic tRNA (Arg) ACG demands a relaxation of the wobble decoding rules.

Authors:  Carolin A Aldinger; Anne-Katrin Leisinger; Kirk W Gaston; Patrick A Limbach; Gabor L Igloi
Journal:  RNA Biol       Date:  2012-08-24       Impact factor: 4.652

Review 3.  Bacterial wobble modifications of NNA-decoding tRNAs.

Authors:  Emil M Nilsson; Rebecca W Alexander
Journal:  IUBMB Life       Date:  2019-07-08       Impact factor: 3.885

Review 4.  The Evolution of Substrate Specificity by tRNA Modification Enzymes.

Authors:  Katherine M McKenney; Mary Anne T Rubio; Juan D Alfonzo
Journal:  Enzymes       Date:  2017-04-26

5.  Unusual noncanonical intron editing is important for tRNA splicing in Trypanosoma brucei.

Authors:  Mary Anne T Rubio; Zdeněk Paris; Kirk W Gaston; Ian M C Fleming; Paul Sample; Christopher R Trotta; Juan D Alfonzo
Journal:  Mol Cell       Date:  2013-10-03       Impact factor: 17.970

6.  tRNAomics: tRNA gene copy number variation and codon use provide bioinformatic evidence of a new anticodon:codon wobble pair in a eukaryote.

Authors:  James R Iben; Richard J Maraia
Journal:  RNA       Date:  2012-05-14       Impact factor: 4.942

Review 7.  Naturally occurring modified ribonucleosides.

Authors:  Phillip J McCown; Agnieszka Ruszkowska; Charlotte N Kunkler; Kurtis Breger; Jacob P Hulewicz; Matthew C Wang; Noah A Springer; Jessica A Brown
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-04-16       Impact factor: 9.349

8.  The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)(a).

Authors:  Harold S Bernhardt
Journal:  Biol Direct       Date:  2012-07-13       Impact factor: 4.540

Review 9.  From end to end: tRNA editing at 5'- and 3'-terminal positions.

Authors:  Heike Betat; Yicheng Long; Jane E Jackman; Mario Mörl
Journal:  Int J Mol Sci       Date:  2014-12-22       Impact factor: 5.923

10.  Loss of the mitochondrial protein-only ribonuclease P complex causes aberrant tRNA processing and lethality in Drosophila.

Authors:  Aditya Sen; Agnes Karasik; Aranganathan Shanmuganathan; Elena Mirkovic; Markos Koutmos; Rachel T Cox
Journal:  Nucleic Acids Res       Date:  2016-04-30       Impact factor: 16.971
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