Literature DB >> 22022966

RNA editing in plant organelles. Why make it easy?

B Castandet1, A Araya.   

Abstract

Gene expression in plant organelles involves a number of distinct co- or posttranscriptional nucleic acid modifications: 5' and 3' RNA processing, cis- and trans-splicing, RNA stability, and RNA editing. All contribute to the steady-state RNA levels available for the translation of the reduced but essential organellar genetic information. Different from other maturation processes, RNA editing at the transcript level modifies the information encoded by organellar genes and is an essential step for the production of functional proteins. Editing changes are extensive in mitochondria from flowering plants with more than 400 cytidine-to-uridine changes that involve most transcripts, while in chloroplasts they are limited to some RNAs. An additional U-to-C RNA editing reaction is observed with the C-to-U transitions in fern and moss organelles. While RNA editing targets mostly concern coding regions, some events occur in untranslated regions. Whereas RNA editing is genetically and biochemically distinct from other RNA modification activities, evidence is growing for a tight connection between the different processing events. Although the understanding of this astonishing mechanism has increased since its discovery in 1989, some important questions remain unanswered. In this review we discuss the current knowledge on the different aspects of C-to-U, and to a lesser extent U-to-C, and look at RNA editing in plants with a particular emphasis on recent developments involving the role of pentatricopeptide repeat (PPR) proteins in this process.

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Year:  2011        PMID: 22022966     DOI: 10.1134/S0006297911080086

Source DB:  PubMed          Journal:  Biochemistry (Mosc)        ISSN: 0006-2979            Impact factor:   2.487


  18 in total

1.  Function of PPR proteins in plastid gene expression.

Authors:  Toshiharu Shikanai; Sota Fujii
Journal:  RNA Biol       Date:  2013-05-30       Impact factor: 4.652

2.  Tetrapyrrole biosynthetic enzyme protoporphyrinogen IX oxidase 1 is required for plastid RNA editing.

Authors:  Fan Zhang; Weijiang Tang; Boris Hedtke; Linlin Zhong; Lin Liu; Lianwei Peng; Congming Lu; Bernhard Grimm; Rongcheng Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-13       Impact factor: 11.205

3.  Abundant and selective RNA-editing events in the medicinal mushroom Ganoderma lucidum.

Authors:  Yingjie Zhu; Hongmei Luo; Xin Zhang; Jingyuan Song; Chao Sun; Aijia Ji; Jiang Xu; Shilin Chen
Journal:  Genetics       Date:  2014-02-04       Impact factor: 4.562

4.  APOBEC3A is implicated in a novel class of G-to-A mRNA editing in WT1 transcripts.

Authors:  Ahmadreza Niavarani; Erin Currie; Yasmin Reyal; Fernando Anjos-Afonso; Stuart Horswell; Emmanuel Griessinger; Jose Luis Sardina; Dominique Bonnet
Journal:  PLoS One       Date:  2015-03-25       Impact factor: 3.240

5.  Pervasive Transcription of Mitochondrial, Plastid, and Nucleomorph Genomes across Diverse Plastid-Bearing Species.

Authors:  Matheus Sanitá Lima; David Roy Smith
Journal:  Genome Biol Evol       Date:  2017-10-01       Impact factor: 3.416

6.  Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants.

Authors:  Yusuke Yagi; Shimpei Hayashi; Keiko Kobayashi; Takashi Hirayama; Takahiro Nakamura
Journal:  PLoS One       Date:  2013-03-05       Impact factor: 3.240

7.  RNA editing in mitochondrial trans-introns is required for splicing.

Authors:  Jean-Claude Farré; Cindy Aknin; Alejandro Araya; Benoît Castandet
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

Review 8.  Complex RNA metabolism in the chloroplast: an update on the psbB operon.

Authors:  Rhea Stoppel; Jörg Meurer
Journal:  Planta       Date:  2012-10-13       Impact factor: 4.116

9.  Pentatricopeptide repeat proteins: a set of modular RNA-specific binders massively used for organelle gene expression.

Authors:  Philippe Giegé
Journal:  RNA Biol       Date:  2013-08-07       Impact factor: 4.652

10.  Pentatricopeptide repeat proteins involved in plant organellar RNA editing.

Authors:  Yusuke Yagi; Makoto Tachikawa; Hisayo Noguchi; Soichirou Satoh; Junichi Obokata; Takahiro Nakamura
Journal:  RNA Biol       Date:  2013-05-03       Impact factor: 4.652

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