Literature DB >> 22022947

Adopting orphans: comprehensive genetic testing of Mendelian diseases of childhood by next-generation sequencing.

Stephen F Kingsmore1, Darrell L Dinwiddie, Neil A Miller, Sarah E Soden, Carol J Saunders.   

Abstract

Orphan diseases are individually uncommon but collectively contribute significantly to pediatric morbidity, mortality and healthcare costs. Current molecular testing for rare genetic disorders is often a lengthy and costly endeavor, and in many cases a molecular diagnosis is never achieved despite extensive testing. Diseases with locus heterogeneity or overlapping signs and symptoms are especially challenging owing to the number of potential targets. Consequently, there is immense need for scalable, economical, rapid, multiplexed diagnostic testing for rare Mendelian diseases. Recent advances in next-generation sequencing and bioinformatic technologies have the potential to change the standard of care for the diagnosis of rare genetic disorders. These advances will be reviewed in the setting of a recently developed test for 592 autosomal recessive and X-linked diseases.

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Year:  2011        PMID: 22022947      PMCID: PMC3740118          DOI: 10.1586/erm.11.70

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  40 in total

1.  A universal carrier test for the long tail of Mendelian disease.

Authors:  Balaji S Srinivasan; Eric A Evans; Jason Flannick; A Scott Patterson; Christopher C Chang; Tuan Pham; Sharon Young; Amit Kaushal; James Lee; Jessica L Jacobson; Pasquale Patrizio
Journal:  Reprod Biomed Online       Date:  2010-08-21       Impact factor: 3.828

2.  The incidentalome: a threat to genomic medicine.

Authors:  Isaac S Kohane; Daniel R Masys; Russ B Altman
Journal:  JAMA       Date:  2006-07-12       Impact factor: 56.272

3.  Newborn screening: toward a uniform screening panel and system--executive summary.

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Journal:  Pediatrics       Date:  2006-05       Impact factor: 7.124

4.  Endocrine profile and phenotype-genotype correlation in unrelated patients with non-classical congenital adrenal hyperplasia.

Authors:  Nicos Skordis; Christos Shammas; Elisavet Efstathiou; Katerina Kaffe; Vassos Neocleous; Leonidas A Phylactou
Journal:  Clin Biochem       Date:  2011-05-24       Impact factor: 3.281

5.  Cystic fibrosis mutations and genotype-pulmonary phenotype analysis.

Authors:  Andrew T Braun; Philip M Farrell; Claude Ferec; Marie Pierre Audrezet; Anita Laxova; Zhanhai Li; Michael R Kosorok; Marjorie A Rosenberg; William M Gershan
Journal:  J Cyst Fibros       Date:  2005-11-04       Impact factor: 5.482

6.  Management of High-Throughput DNA Sequencing Projects: Alpheus.

Authors:  Neil A Miller; Stephen F Kingsmore; Andrew Farmer; Raymond J Langley; Joann Mudge; John A Crow; Alvaro J Gonzalez; Faye D Schilkey; Ryan J Kim; Jennifer van Velkinburgh; Gregory D May; C Forrest Black; M Kathy Myers; John P Utsey; Nicholas S Frost; David J Sugarbaker; Raphael Bueno; Stephen R Gullans; Susan M Baxter; Steve W Day; Ernest F Retzel
Journal:  J Comput Sci Syst Biol       Date:  2008-12-26

7.  Linkage of familial hemophagocytic lymphohistiocytosis (FHL) type-4 to chromosome 6q24 and identification of mutations in syntaxin 11.

Authors:  Udo zur Stadt; Susanne Schmidt; Brigitte Kasper; Karin Beutel; A Sarper Diler; Jan-Inge Henter; Hartmut Kabisch; Reinhard Schneppenheim; Peter Nürnberg; Gritta Janka; Hans Christian Hennies
Journal:  Hum Mol Genet       Date:  2005-02-09       Impact factor: 6.150

8.  Contribution of birth defects and genetic diseases to pediatric hospitalizations. A population-based study.

Authors:  P W Yoon; R S Olney; M J Khoury; W M Sappenfield; G F Chavez; D Taylor
Journal:  Arch Pediatr Adolesc Med       Date:  1997-11

9.  A highly annotated whole-genome sequence of a Korean individual.

Authors:  Jong-Il Kim; Young Seok Ju; Hansoo Park; Sheehyun Kim; Seonwook Lee; Jae-Hyuk Yi; Joann Mudge; Neil A Miller; Dongwan Hong; Callum J Bell; Hye-Sun Kim; In-Soon Chung; Woo-Chung Lee; Ji-Sun Lee; Seung-Hyun Seo; Ji-Young Yun; Hyun Nyun Woo; Heewook Lee; Dongwhan Suh; Seungbok Lee; Hyun-Jin Kim; Maryam Yavartanoo; Minhye Kwak; Ying Zheng; Mi Kyeong Lee; Hyunjun Park; Jeong Yeon Kim; Omer Gokcumen; Ryan E Mills; Alexander Wait Zaranek; Joseph Thakuria; Xiaodi Wu; Ryan W Kim; Jim J Huntley; Shujun Luo; Gary P Schroth; Thomas D Wu; HyeRan Kim; Kap-Seok Yang; Woong-Yang Park; Hyungtae Kim; George M Church; Charles Lee; Stephen F Kingsmore; Jeong-Sun Seo
Journal:  Nature       Date:  2009-07-08       Impact factor: 49.962

10.  Evidence-based classification of recommendations on use of genomic tests in clinical practice: dealing with insufficient evidence.

Authors:  Muin J Khoury; Ralph J Coates; James P Evans
Journal:  Genet Med       Date:  2010-11       Impact factor: 8.822

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  24 in total

Review 1.  Whole-Exome Sequencing and Whole-Genome Sequencing in Critically Ill Neonates Suspected to Have Single-Gene Disorders.

Authors:  Laurie D Smith; Laurel K Willig; Stephen F Kingsmore
Journal:  Cold Spring Harb Perspect Med       Date:  2015-12-18       Impact factor: 6.915

2.  Molecular diagnosis of infantile onset inflammatory bowel disease by exome sequencing.

Authors:  Darrell L Dinwiddie; Julia M Bracken; Julie A Bass; Kathy Christenson; Sarah E Soden; Carol J Saunders; Neil A Miller; Vivekanand Singh; David L Zwick; Charles C Roberts; Jignesh Dalal; Stephen F Kingsmore
Journal:  Genomics       Date:  2013-08-31       Impact factor: 5.736

3.  Whole-genome sequencing for identification of Mendelian disorders in critically ill infants: a retrospective analysis of diagnostic and clinical findings.

Authors:  Laurel K Willig; Josh E Petrikin; Laurie D Smith; Carol J Saunders; Isabelle Thiffault; Neil A Miller; Sarah E Soden; Julie A Cakici; Suzanne M Herd; Greyson Twist; Aaron Noll; Mitchell Creed; Patria M Alba; Shannon L Carpenter; Mark A Clements; Ryan T Fischer; J Allyson Hays; Howard Kilbride; Ryan J McDonough; Jamie L Rosterman; Sarah L Tsai; Lee Zellmer; Emily G Farrow; Stephen F Kingsmore
Journal:  Lancet Respir Med       Date:  2015-04-27       Impact factor: 30.700

4.  Alström Syndrome: Mutation Spectrum of ALMS1.

Authors:  Jan D Marshall; Jean Muller; Gayle B Collin; Gabriella Milan; Stephen F Kingsmore; Darrell Dinwiddie; Emily G Farrow; Neil A Miller; Francesca Favaretto; Pietro Maffei; Hélène Dollfus; Roberto Vettor; Jürgen K Naggert
Journal:  Hum Mutat       Date:  2015-05-18       Impact factor: 4.878

5.  Next-generation community genetics for low- and middle-income countries.

Authors:  Stephen F Kingsmore; John D Lantos; Darrell L Dinwiddie; Neil A Miller; Sarah E Soden; Emily G Farrow; Carol J Saunders
Journal:  Genome Med       Date:  2012-03-29       Impact factor: 11.117

Review 6.  The phenotypic and molecular genetic spectrum of Alström syndrome in 44 Turkish kindreds and a literature review of Alström syndrome in Turkey.

Authors:  Ayşegül Ozantürk; Jan D Marshall; Gayle B Collin; Selma Düzenli; Robert P Marshall; Şükrü Candan; Tülay Tos; İhsan Esen; Mustafa Taşkesen; Atilla Çayır; Şükrü Öztürk; İhsan Üstün; Esra Ataman; Emin Karaca; Taha Reşid Özdemir; İlknur Erol; Fehime Kara Eroğlu; Deniz Torun; Erhan Parıltay; Elif Yılmaz-Güleç; Ender Karaca; M Emre Atabek; Nursel Elçioğlu; İlhan Satman; Claes Möller; Jean Muller; Jürgen K Naggert; Rıza Köksal Özgül
Journal:  J Hum Genet       Date:  2014-10-09       Impact factor: 3.172

7.  Rapid whole-genome sequencing for genetic disease diagnosis in neonatal intensive care units.

Authors:  Carol Jean Saunders; Neil Andrew Miller; Sarah Elizabeth Soden; Darrell Lee Dinwiddie; Aaron Noll; Noor Abu Alnadi; Nevene Andraws; Melanie LeAnn Patterson; Lisa Ann Krivohlavek; Joel Fellis; Sean Humphray; Peter Saffrey; Zoya Kingsbury; Jacqueline Claire Weir; Jason Betley; Russell James Grocock; Elliott Harrison Margulies; Emily Gwendolyn Farrow; Michael Artman; Nicole Pauline Safina; Joshua Erin Petrikin; Kevin Peter Hall; Stephen Francis Kingsmore
Journal:  Sci Transl Med       Date:  2012-10-03       Impact factor: 17.956

8.  Long-term clinical follow-up and molecular testing for diagnosis of the first Tunisian family with Alström syndrome.

Authors:  Amine Chakroun; Mariem Ben Said; Amine Ennouri; Imen Achour; Mouna Mnif; Mohamed Abid; Abdelmonem Ghorbel; Jan D Marshall; Jürgen K Naggert; Saber Masmoudi
Journal:  Eur J Med Genet       Date:  2016-08-12       Impact factor: 2.708

9.  Genomic medicine: evolving science, evolving ethics.

Authors:  Sarah E Soden; Emily G Farrow; Carol J Saunders; John D Lantos
Journal:  Per Med       Date:  2012       Impact factor: 2.512

10.  Diagnosis of mitochondrial disorders by concomitant next-generation sequencing of the exome and mitochondrial genome.

Authors:  Darrell L Dinwiddie; Laurie D Smith; Neil A Miller; Andrea M Atherton; Emily G Farrow; Meghan E Strenk; Sarah E Soden; Carol J Saunders; Stephen F Kingsmore
Journal:  Genomics       Date:  2013-04-28       Impact factor: 5.736

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