| Literature DB >> 22016629 |
Fu-Chien Liu1, Chung-Ren Su, Tzi-Yi Wu, Shyh-Gang Su, Huey-Lang Yang, John Han-You Lin, Tian-Shung Wu.
Abstract
A quantitative determination method of N-acetyl-d-glucosamine (GlcNAc) and N,N'-diacetylchitobiose (GlcNAc)(2) is proposed using a proton nuclear magnetic resonance experiment. N-acetyl groups of GlcNAc and (GlcNAc)(2) are chosen as target signals, and the deconvolution technique is used to determine the concentration of the corresponding compound. Compared to the HPLC method, (1)H-NMR spectroscopy is simple and fast. The method can be used for the analysis of chitin hydrolyzed products with real-time analysis, and for quantifying the content of products using internal standards without calibration curves. This method can be used to quickly evaluate chitinase activity. The temperature dependence of (1)H-NMR spectra (VT-NMR) is studied to monitor the chemical shift variation of acetyl peak. The acetyl groups of products are involved in intramolecular H-bonding with the OH group on anomeric sites. The rotation of the acetyl group is closely related to the intramolecular hydrogen bonding pattern, as suggested by the theoretical data (molecular modeling).Entities:
Keywords: chitin; enzyme; hydrolysis; kinetics; nuclear magnetic resonance
Mesh:
Substances:
Year: 2011 PMID: 22016629 PMCID: PMC3189753 DOI: 10.3390/ijms12095828
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Scheme 1Structures of N-acetyl-d-glucosamine (GlcNAc) and N,N′-diacetylchitobiose (GlcNAc)2.
Figure 11H-NMR spectroscopy of N-acetyl group of GlcNAc, (GlcNAc)2, and the hydrolyzates of chitin by chitinase at 290 K.
Figure 21H-NMR spectroscopy of anomeric protons of GlcNAc, (GlcNAc)2, and the hydrolyzates of chitin by chitinase at 290 K.
The target 1H-NMR chemical shifts of GlcNAc and (GlcNAc)2.
| Substance | 1H shift (δ) | Assignment |
|---|---|---|
| 2.05 (s) | ||
| 5.21 (d, | H | |
| 4.72 (d, | H | |
| 2.08 (s), 2.05 (s) | ||
| 5.20 (d, | H | |
| 4.70 (d, | H | |
| 4.60 (d, | H | |
| 4.59 (d, | H | |
Solvent: deuterated phosphate buffer, pH = 5.0, the concentration is 50%: 50% mixture of 0.1 M citric acid and 0.1 M disodium hydrogen phosphate.
The 1H-NMR peak integral of the (GlcNAc)2 and the internal standard (TSP). Calibration curves was determined in the concentration ranges for (GlcNAc)2 to evaluate the accuracy of 1H-NMR at various concentrations.
| No. | Area of δ 0 (TSP) | Area of δ 2.08 and 2.05 (GlcNAc)2 | Real Concentration of (GlcNAc)2 (mM) | Calculate Concentration of (GlcNAc)2 (mM) | |
|---|---|---|---|---|---|
| 1 | 120.491 | 4.968 | 4.819 | 0.00909 | 0.11076 |
| 2 | 103.17 | 10.524 | 10.65 | 0.227 | 0.27987 |
| 3 | 110.806 | 20.455 | 20.791 | 0.4545 | 0.50759 |
| 4 | 100.272 | 27.589 | 27.258 | 0.681 | 0.75850 |
| 5 | 115.023 | 40.753 | 41.764 | 0.909 | 0.99705 |
Solvent: deuterated phosphate buffer, pH = 5.0.
Comparison of the quantitative determination of GlcNAc and (GlcNAc)2.
| HPLC | NMR | ||||
|---|---|---|---|---|---|
| Digestion Time (day) | (GlcNAc)2 (mM) | (GlcNAc) (mM) | Digestion Time (day) | (GlcNAc)2 (mM) | (GlcNAc) (mM) |
| 1 | 3.782 | 1.575 | 1 | 3.708 | 1.624 |
| 2 | 4.435 | 2.453 | 2 | 4.309 | 2.551 |
| 3 | 4.581 | 2.900 | 3 | 4.542 | 2.973 |
| 4 | 4.921 | 3.919 | 3 | 4.978 | 3.941 |
| 5 | 5.067 | 4.834 | 4 | 5.064 | 4.866 |
D2O phosphate buffer, pH = 7.0.
Production of GlcNAc and (GlcNAc)2 by chitinase from Streptomyces griseus HUT-6037.
| Digestion Time (day) | (GlcNAc)2 (mM) | GlcNAc (mM) | ||||
|---|---|---|---|---|---|---|
| pH = 5 | ||||||
| 1 | 3.554 | 55.5 | 44.5 | 2.616 | 58.7 | 41.3 |
| 2 | 4.529 | 55.7 | 44.3 | 3.907 | 58.6 | 41.4 |
| 3 | 4.716 | 55.9 | 44.1 | 5.620 | 58.8 | 41.2 |
| 4 | 4.521 | 54.9 | 45.1 | 6.013 | 58.4 | 41.6 |
| 5 | 4.191 | 55.3 | 44.7 | 7.036 | 58.0 | 42.0 |
| pH = 6 | ||||||
| 1 | 3.797 | 61.5 | 38.5 | 2.155 | 57.5 | 42.5 |
| 2 | 4.361 | 59.9 | 40.1 | 3.144 | 58.4 | 41.6 |
| 3 | 4.819 | 59.9 | 40.1 | 4.241 | 59.2 | 40.8 |
| 4 | 4.502 | 61.7 | 38.3 | 5.405 | 60.1 | 39.9 |
| 5 | 4.373 | 60.5 | 39.5 | 6.542 | 59.9 | 40.1 |
| pH = 7 | ||||||
| 1 | 3.708 | 59.9 | 40.1 | 1.624 | 58.9 | 41.1 |
| 2 | 4.309 | 60.2 | 39.8 | 2.511 | 58.4 | 41.6 |
| 3 | 4.542 | 61.5 | 38.5 | 2.973 | 56.7 | 43.3 |
| 4 | 4.978 | 60.2 | 39.8 | 3.941 | 59.3 | 40.7 |
| 5 | 5.064 | 58.1 | 41.9 | 4.866 | 61.3 | 38.8 |
| pH = 8 | ||||||
| 1 | 3.716 | 60.3 | 39.7 | 1.045 | 58.5 | 41.5 |
| 2 | 4.116 | 59.9 | 40.1 | 1.399 | 59.1 | 40.9 |
| 3 | 4.795 | 60.5 | 39.5 | 1.749 | 58.8 | 41.2 |
| 4 | 4.879 | 60.8 | 39.2 | 2.088 | 59.7 | 40.3 |
| 5 | 5.218 | 60.7 | 39.3 | 2.160 | 58.8 | 41.2 |
| pH = 9 | ||||||
| 1 | 3.859 | 55.6 | 44.4 | 1.039 | 60.5 | 39.5 |
| 2 | 4.347 | 56.0 | 44.0 | 1.476 | 58.3 | 41.7 |
| 3 | 4.609 | 54.2 | 45.8 | 1.611 | 61.6 | 38.4 |
| 4 | 4.890 | 55.4 | 44.6 | 1.725 | 59.7 | 40.3 |
| 5 | 5.346 | 55.9 | 44.1 | 2.087 | 60.8 | 39.2 |
Solvent: deuterated phosphate buffer, pH 5–9, which was prepared by 0.1 M citric acid buffer (pH = 5–6) and 0.1 M Tris buffer (pH = 7–9).
Figure 3The 1H NMR signal of (GlcNAc) and (GlcNAc)2 in pyridine-d.
Figure 4The chemical shift difference of (a) α/β form (GlcNAc) and (b) β-α/β-β form (GlcNAc)2.
The rate constant (k) of (GlcNAc) and (GlcNAc)2 at various temperatures.
| GlcNAc | (GlcNAc)2 | ||||
|---|---|---|---|---|---|
| Temperature (K) | A | B | |||
| Temperature (K) | Temperature (K) | ||||
| 248 | 42.493 | 248 | 9.966 | 248 | 24.24 |
| 258 | 62.679 | 258 | 13.746 | 258 | 36.812 |
| 268 | 78.666 | 268 | 15.899 | 268 | 47.58 |
| 278 | 90.64 | 278 | 17.643 | 278 | 54.627 |
| 288 | 101.33 | 313 | 21.425 | 313 | 77.374 |
| 298 | 107.583 | 323 | 21.629 | 323 | 80.458 |
| 313 | 116.661 | 333 | 21.994 | 333 | 83.397 |
| 323 | 120.419 | 336 | 22.166 | 336 | 83.593 |
| 333 | 123.459 | 337 | 22.328 | 337 | 83.951 |
| 343 | 125.503 | 338 | 22.473 | 338 | 84.114 |
Solvent: pyridine-d.
Fitting parameters of kinetic constants (k) for (GlcNAc) and (GlcNAc)2 at various temperatures (k = a0 + a1T + a2T2 + a3T3).
| a0 | a1 | a2 | a3 | R2a | |
|---|---|---|---|---|---|
| GlcNAc | −2.898 × 103 | 26.15 | −7.612 × 10−2 | 7.461 × 10−5 | 0.9998 |
| (GlcNAc)2 peak A | −6.184 × 102 | 5.82 | −1.776 × 10−2 | 1.82 × 10−5 | 0.9984 |
| (GlcNAc)2 peak B | −9.782 × 102 | 7.653 | −1.789 × 10−2 | 1.345 × 10−5 | 0.9995 |
Correlation coefficient.
Figure 5B3LYP optimized geometrical structure of (GlcNAc) and (GlcNAc)2.
The bond length and bond angle, bond energy of intramolecular hydrogen bond of α and β form (GlcNAc) performed with the Gaussian 03 program.
| C-O | 1.39 Å (C4-O9) | 1.37 Å (C4-O15) | |
| O-H | 0.98 Å (O9-H30) | 0.98 Å (O15-H30) | |
| C=O | 1.24 Å (C23-O25) | 1.23 Å (C23-O25) | |
| Bond length | C-N | 1.36 Å (C23-N16) | 1.36 Å (C23-N16) |
| C-C | 1.52 Å (C23-C26) | 1.52 Å (C23-C26) | |
| N-C | 1.47 Å (N16-C6) | 1.46 Å (N16-C6) | |
| C-C | 1.55 Å (C6-C4) | 1.55 Å (C6-C4) | |
| ∠C-O-H | 109.96° (∠C4-O9-H30) | 109.36° (∠C4-O15-H30) | |
| ∠O-H-O | 163.29° (∠O9-H30-O25) | 150.35° (∠O15-H30-O25) | |
| ∠H-O-C | 107.78° (∠H30-O25-C23) | 107.78° (∠H30-O25-C23) | |
| Bond angle | ∠O-C-N | 122.91° (∠O25-C23-N16) | 122.91° (∠O25-C23-N16) |
| ∠C-N-C | 126.17° (∠C23-N16-C6) | 126.17° (∠C23-N16-C6) | |
| ∠N-C-C | 114.89° (∠N16-C6-C4) | 114.89° (∠N16-C6-C4) | |
| ∠O-C-C | 114.19° (∠O9-C4-C6) | 114.19° (∠O15-C4-C6) | |
| Intramolecular hydrogen bond (Bond length) | O-H | 1.78 Å (O25-H30) | 1.82 Å (O25-H30) |
| Intramolecular hydrogen bond (Bond energy) | O-H | 10 kJ/mole (O25-H30) | 8 kJ/mole (O25-H30) |