| Literature DB >> 22015776 |
Michał Panek1, Tadeusz Pietras, Adam Antczak, Paweł Górski, Piotr Kuna, Janusz Szemraj.
Abstract
N363S and ER22/23EK polymorphisms observed within glucocorticoid receptor gene (NR3C1) may play an important role in the development of bronchial asthma. NR3C1 gene is associated with an altered sensitivity to GCs. The aim of the research project was to study the correlation between this NR3C1 gene polymorphisms and occurrence of asthma in the population of Polish asthmatics. Peripheral blood was obtained from 207 healthy volunteers and 221 asthma patients. Genotyping was carried out with PCR-RFLP method. In the groups of patients with uncontrolled moderate asthma and uncontrolled severe disease, the genotype distribution for the investigated polymorphisms was as follows: N363S-AA, AG, GG occurring with 0.881/0.073/0.046 frequency and ER22/23EK-GG, GA, AA occurring with 0.963/0.037/0.000 frequency. Chi-square analysis revealed a significantly different (P < 0.05) distribution between cases and controls for the N363S polymorphisms. The N363S polymorphism of NR3C1 gene is significantly associated with bronchial asthma, susceptibility to the development of moderate to severe form of uncontrolled bronchial asthma.Entities:
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Year: 2011 PMID: 22015776 PMCID: PMC3294211 DOI: 10.1007/s11033-011-1267-3
Source DB: PubMed Journal: Mol Biol Rep ISSN: 0301-4851 Impact factor: 2.316
Descriptive statistics of the analyzed parameters in controls and cases (general asthma population in the presented study)
| Parameter | Control group | Group of bronchial asthma patients |
|---|---|---|
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| 207 | 221 |
| Gender | 138 women: 69 men | 140 women: 81 men |
| Gender | 66.7% women: 33.3% men | 63.3% women: 36.7% men |
| Mean age | 46.06 years | 48.94 years |
| SD for age | ±16.05 years | ±15.78 years |
| Min. age | 18 years | 19 years |
| Max. age | 85 years | 81 years |
| Kurtosis | −0.94 | −0.96 |
| Skewness | 0.10 | −0.19 |
| Median | 47.50 | 51.00 |
| FEV1 (L) mean ± SD | 2.95 | 2.20 |
| FEV1 (L) median | 2.85 | 2.17 |
| FEV1 (%) mean ± SD | 96.17 | 73.13 |
| FEV1 (%) median | 96 | 74 |
Descriptive statistics of the analyzed parameters in cases (general asthma population in the presented study)
| Parameter | Group of bronchial asthma patients (number) | Group of bronchial asthma patients (%) |
|---|---|---|
| Asthma | 221 | 100.00 |
| Non-severe asthma | 147 | 66.52 |
| Severe asthma | 74 | 33.48 |
| Chronic mild asthma | 34 | 15.38 |
| Chronic moderate asthma | 113 | 51.14 |
| Chronic severe steroid-dependent asthma | 66 | 29.86 |
| Chronic severe steroid-resistant asthma | 8 | 3.62 |
Characteristics of the group of patients with moderate and severe asthma with respect to the extent of control of the disease according to ACT™
| Parameter | Moderate bronchial asthma | Severe bronchial asthma |
|---|---|---|
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| 113 | 74 |
| ACT™ score 25 | 8 (7.08%) | 2 (2.70%) |
| ACT™ score 24–20 | 49 (43.36%) | 19 (25.68%) |
| ACT™ score ≤19 | 56 (49.56%) | 53 (71.62%) |
Description of Hardy–Weinberg equilibrium for control and cases groups (moderate and severe asthma, ACT™ score ≤19)
| SNPs | Tests for deviation from Hardy–Weinberg equilibrium | |
|---|---|---|
| Controls | Cases | |
| N363S | nAA = 162 (153.92) | nAA = 96 (91.74) |
| nAG = 33 (49.15) | nAG = 8 (16.51) | |
| nGG = 12 (3.92) | nGG = 5 (0.74) | |
| f_a1 = 0.86 ± 0.020 | f_a1 = 0.92 ± 0.023 | |
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| ER22/23EK | nGG = 194 (194.17) | nGG = 104 (104.04) |
| nGA = 12 (11.65) | nGA = 4 (3.93) | |
| nAA = 0 (0.17) | nAA = 0 (0.04) | |
| f_a1 = 0.97 ± 0.008 | f_a1 = 0.98 ± 0.009 | |
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Tests for deviation from Hardy–Weinberg equilibrium were performed using free software provided by Institut für Humangenetik, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt (Germany)
The tests for association are adapted from Sasieni (1997) [36]
f_a1 Frequency of allele 1 ± SD
F Inbreeding coefficient
P (Pearson) Pearson’s goodness-of-fit chi-square (degree of freedom = 1)
P (Llr) Log likelihood ratio chi-square (degree of freedom = 1)
P (Exact) Exact test
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Fig. 1Description of diagram: black line controls; blue line cases. De Finetti diagram with Hardy–Weinberg parabola was drawn using free software provided by Institut für Humangenetik, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt (Germany). (Color figure online)
Graph 1Descriptive statistics of the analyzed allele of N363S and ER22/23EK polymorphisms of NR3C1 gene in controls and cases (moderate and severe asthma, ACT™ score ≤19)
Graph 2Descriptive statistics of the analyzed allele of N363S and ER22/23EK polymorphisms of NR3C1 gene in controls and cases (general asthma population in the presented study)
Description of tests for association (CI 95% confidence interval) for control and cases groups (ACT™ score ≤19)
| SNP | Tests for association (CI 95% confidence interval) | ||||
|---|---|---|---|---|---|
| Allele freq. difference | Heterozygous | Homozygous | Allele positivity | Armitage’s trend test | |
| N363S | Risk allele G | ||||
| [G] vs. [A] | [AG] vs. [AA] | [GG] vs. [AA] | [AG + GG] vs. [AA] | Common odds ratio | |
| Odds ratio = 0.564 | Odds ratio = 0.409 | Odds ratio = 0.703 | Odds ratio = 0.487 | Odds ratio = 0.721 | |
| CI = [0.323–0.984] | CI = [0.182–0.922] | CI = [0.240–2.057] | CI = [0.250–0.950] | ||
| χ2 = 4.15 | χ2 = 4.88 | χ2 = 0.42 | χ2 = 4.59 | χ2 = 3.01 | |
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| Risk allele A | |||||
| [A] vs. [G] | [AG] vs. [GG] | [AA] vs. [AG] | [AA + AG] vs. [GG] | Common odds ratio | |
| Odds ratio = 1.774 | Odds ratio = 0.582 | Odds ratio = 1.422 | Odds ratio = 1.280 | Odds ratio = 1.366 | |
| CI = [1.016–3.098] | CI = [0.159–2.131] | CI = [0.486–4.160] | CI = [0.439–3.732] | ||
| χ2 = 4.15 | χ2 = 0.68 | χ2 = 0.42 | χ2 = 0.21 | χ2 = 3.01 | |
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Tests for association were performed using free software provided by Institut für Humangenetik, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt (Germany)
The tests for association are adapted from Sasieni (1997) [36]
f_a1 Frequency of allele 1 ± SD
F Inbreeding coefficient
P (Pearson) Pearson’s goodness-of-fit chi-square (degree of freedom = 1)
P (Llr) Log likelihood ratio chi-square (degree of freedom = 1)
P (Exact) Exact test
n number