Literature DB >> 22014650

A new chapter in the transcription SAGA.

Nadine L Samara1, Cynthia Wolberger.   

Abstract

Eukaryotic transcriptional coactivators are multi-subunit complexes that both modify chromatin and recognize histone modifications. Until recently, structural information on these large complexes has been limited to isolated enzymatic domains or chromatin-binding motifs. This review summarizes recent structural studies of the SAGA coactivator complex that have greatly advanced our understanding of the interplay between its different subunits. The structure of the four-protein SAGA deubiquitinating module has provided a first glimpse of the larger organization of a coactivator complex, and illustrates how interdependent subunits interact with each other to form an active and functional enzyme complex. In addition, structures of the histone binding domains of ATXN7 and Sgf29 shed light on the interactions with chromatin that help recruit the SAGA complex.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22014650      PMCID: PMC3232345          DOI: 10.1016/j.sbi.2011.09.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  43 in total

Review 1.  Transcriptional coactivator complexes.

Authors:  A M Näär; B D Lemon; R Tjian
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

2.  SAGA-mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system.

Authors:  Vikki M Weake; Kenneth K Lee; Sebastián Guelman; Chia-Hui Lin; Christopher Seidel; Susan M Abmayr; Jerry L Workman
Journal:  EMBO J       Date:  2008-01-10       Impact factor: 11.598

3.  Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae.

Authors:  S D Briggs; M Bryk; B D Strahl; W L Cheung; J K Davie; S Y Dent; F Winston; C D Allis
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

4.  The ubiquitin binding domain ZnF UBP recognizes the C-terminal diglycine motif of unanchored ubiquitin.

Authors:  Francisca E Reyes-Turcu; John R Horton; James E Mullally; Annie Heroux; Xiaodong Cheng; Keith D Wilkinson
Journal:  Cell       Date:  2006-03-24       Impact factor: 41.582

5.  Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation.

Authors:  J E Brownell; J Zhou; T Ranalli; R Kobayashi; D G Edmondson; S Y Roth; C D Allis
Journal:  Cell       Date:  1996-03-22       Impact factor: 41.582

6.  Cloning of the SCA7 gene reveals a highly unstable CAG repeat expansion.

Authors:  G David; N Abbas; G Stevanin; A Dürr; G Yvert; G Cancel; C Weber; G Imbert; F Saudou; E Antoniou; H Drabkin; R Gemmill; P Giunti; A Benomar; N Wood; M Ruberg; Y Agid; J L Mandel; A Brice
Journal:  Nat Genet       Date:  1997-09       Impact factor: 38.330

7.  Yeast Ataxin-7 links histone deubiquitination with gene gating and mRNA export.

Authors:  Alwin Köhler; Maren Schneider; Ghislain G Cabal; Ulf Nehrbass; Ed Hurt
Journal:  Nat Cell Biol       Date:  2008-05-18       Impact factor: 28.824

8.  Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery.

Authors:  Susana Rodríguez-Navarro; Tamás Fischer; Ming-Juan Luo; Oreto Antúnez; Susanne Brettschneider; Johannes Lechner; Jose E Pérez-Ortín; Robin Reed; Ed Hurt
Journal:  Cell       Date:  2004-01-09       Impact factor: 41.582

9.  Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde.

Authors:  Min Hu; Pingwei Li; Muyang Li; Wenyu Li; Tingting Yao; Jia-Wei Wu; Wei Gu; Robert E Cohen; Yigong Shi
Journal:  Cell       Date:  2002-12-27       Impact factor: 41.582

10.  Structural basis for the interaction between yeast Spt-Ada-Gcn5 acetyltransferase (SAGA) complex components Sgf11 and Sus1.

Authors:  Andrew M Ellisdon; Divyang Jani; Alwin Köhler; Ed Hurt; Murray Stewart
Journal:  J Biol Chem       Date:  2009-12-09       Impact factor: 5.157

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  26 in total

1.  Proteins: histones and chromatin.

Authors:  Patrick Cramer; Cynthia Wolberger
Journal:  Curr Opin Struct Biol       Date:  2011-11-11       Impact factor: 6.809

2.  The Mediator subunit MED23 couples H2B mono-ubiquitination to transcriptional control and cell fate determination.

Authors:  Xiao Yao; Zhanyun Tang; Xing Fu; Jingwen Yin; Yan Liang; Chonghui Li; Huayun Li; Qing Tian; Robert G Roeder; Gang Wang
Journal:  EMBO J       Date:  2015-09-01       Impact factor: 11.598

3.  Structural basis for activation of SAGA histone acetyltransferase Gcn5 by partner subunit Ada2.

Authors:  Jian Sun; Marcin Paduch; Sang-Ah Kim; Ryan M Kramer; Adam F Barrios; Vincent Lu; Judy Luke; Svitlana Usatyuk; Anthony A Kossiakoff; Song Tan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-17       Impact factor: 11.205

4.  Architecture of the Saccharomyces cerevisiae SAGA transcription coactivator complex.

Authors:  Yan Han; Jie Luo; Jeffrey Ranish; Steven Hahn
Journal:  EMBO J       Date:  2014-09-12       Impact factor: 11.598

Review 5.  Mechanisms for regulating deubiquitinating enzymes.

Authors:  Cynthia Wolberger
Journal:  Protein Sci       Date:  2014-02-12       Impact factor: 6.725

6.  Poly(Q) Expansions in ATXN7 Affect Solubility but Not Activity of the SAGA Deubiquitinating Module.

Authors:  Xianjiang Lan; Evangelia Koutelou; Andria C Schibler; Yi Chun Chen; Patrick A Grant; Sharon Y R Dent
Journal:  Mol Cell Biol       Date:  2015-03-09       Impact factor: 4.272

7.  Dissenting degradation: Deubiquitinases in cell cycle and cancer.

Authors:  Thomas Bonacci; Michael J Emanuele
Journal:  Semin Cancer Biol       Date:  2020-03-20       Impact factor: 15.707

Review 8.  Functions of SAGA in development and disease.

Authors:  Li Wang; Sharon Y R Dent
Journal:  Epigenomics       Date:  2014-06       Impact factor: 4.778

Review 9.  Tudor: a versatile family of histone methylation 'readers'.

Authors:  Rui Lu; Gang Greg Wang
Journal:  Trends Biochem Sci       Date:  2013-09-10       Impact factor: 13.807

10.  Consensus paper: pathological mechanisms underlying neurodegeneration in spinocerebellar ataxias.

Authors:  A Matilla-Dueñas; T Ashizawa; A Brice; S Magri; K N McFarland; M Pandolfo; S M Pulst; O Riess; D C Rubinsztein; J Schmidt; T Schmidt; D R Scoles; G Stevanin; F Taroni; B R Underwood; I Sánchez
Journal:  Cerebellum       Date:  2014-04       Impact factor: 3.847

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