Literature DB >> 18188155

SAGA-mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system.

Vikki M Weake1, Kenneth K Lee, Sebastián Guelman, Chia-Hui Lin, Christopher Seidel, Susan M Abmayr, Jerry L Workman.   

Abstract

Nonstop, which has previously been shown to have homology to ubiquitin proteases, is required for proper termination of axons R1-R6 in the optic lobe of the developing Drosophila eye. Herein, we establish that Nonstop actually functions as an ubiquitin protease to control the levels of ubiquitinated histone H2B in flies. We further establish that Nonstop is the functional homolog of yeast Ubp8, and can substitute for Ubp8 function in yeast cells. In yeast, Ubp8 activity requires Sgf11. We show that in Drosophila, loss of Sgf11 function causes similar photoreceptor axon-targeting defects as loss of Nonstop. Ubp8 and Sgf11 are components of the yeast SAGA complex, suggesting that Nonstop function might be mediated through the Drosophila SAGA complex. Indeed, we find that Nonstop does associate with SAGA components in flies, and mutants in other SAGA subunits display nonstop phenotypes, indicating that SAGA complex is required for accurate axon guidance in the optic lobe. Candidate genes regulated by SAGA that may be required for correct axon targeting were identified by microarray analysis of gene expression in SAGA mutants.

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Year:  2008        PMID: 18188155      PMCID: PMC2234343          DOI: 10.1038/sj.emboj.7601966

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  44 in total

1.  Glial cells mediate target layer selection of retinal axons in the developing visual system of Drosophila.

Authors:  B Poeck; S Fischer; D Gunning; S L Zipursky; I Salecker
Journal:  Neuron       Date:  2001-01       Impact factor: 17.173

Review 2.  Making connections in the fly visual system.

Authors:  Thomas R Clandinin; S Lawrence Zipursky
Journal:  Neuron       Date:  2002-08-29       Impact factor: 17.173

3.  Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter.

Authors:  Adam Wood; Nevan J Krogan; Jim Dover; Jessica Schneider; Jonathan Heidt; Marry Ann Boateng; Kimberly Dean; Ashkan Golshani; Yi Zhang; Jack F Greenblatt; Mark Johnston; Ali Shilatifard
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

4.  Tissue-specific gene expression and ecdysone-regulated genomic networks in Drosophila.

Authors:  Tong-Ruei Li; Kevin P White
Journal:  Dev Cell       Date:  2003-07       Impact factor: 12.270

5.  New nomenclature for chromatin-modifying enzymes.

Authors:  C David Allis; Shelley L Berger; Jacques Cote; Sharon Dent; Thomas Jenuwien; Tony Kouzarides; Lorraine Pillus; Danny Reinberg; Yang Shi; Ramin Shiekhattar; Ali Shilatifard; Jerry Workman; Yi Zhang
Journal:  Cell       Date:  2007-11-16       Impact factor: 41.582

6.  Two different Drosophila ADA2 homologues are present in distinct GCN5 histone acetyltransferase-containing complexes.

Authors:  Selen Muratoglu; Sofia Georgieva; Gábor Pápai; Elisabeth Scheer; Izzet Enünlü; Orbán Komonyi; Imre Cserpán; Lubov Lebedeva; Elena Nabirochkina; Andor Udvardy; László Tora; Imre Boros
Journal:  Mol Cell Biol       Date:  2003-01       Impact factor: 4.272

7.  Rad6-dependent ubiquitination of histone H2B in yeast.

Authors:  K Robzyk; J Recht; M A Osley
Journal:  Science       Date:  2000-01-21       Impact factor: 47.728

8.  In vivo Structure/Function analysis of the Drosophila fat facets deubiquitinating enzyme gene.

Authors:  X Chen; J A Fischer
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

9.  Cell-autonomous requirement of the USP/EcR-B ecdysone receptor for mushroom body neuronal remodeling in Drosophila.

Authors:  T Lee; S Marticke; C Sung; S Robinow; L Luo
Journal:  Neuron       Date:  2000-12       Impact factor: 17.173

10.  Two Drosophila Ada2 homologues function in different multiprotein complexes.

Authors:  Thomas Kusch; Sebastián Guelman; Susan M Abmayr; Jerry L Workman
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

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  68 in total

1.  Enzymatic assays for assessing histone deubiquitylation activity.

Authors:  Robyn T Sussman; Xiao-Yong Zhang; Steven B McMahon
Journal:  Methods       Date:  2011-04-12       Impact factor: 3.608

Review 2.  ATAC-king the complexity of SAGA during evolution.

Authors:  Gianpiero Spedale; H Th Marc Timmers; W W M Pim Pijnappel
Journal:  Genes Dev       Date:  2012-03-15       Impact factor: 11.361

3.  Regulation of histone H2A and H2B deubiquitination and Xenopus development by USP12 and USP46.

Authors:  Heui-Yun Joo; Amada Jones; Chunying Yang; Ling Zhai; Archer D Smith; Zhuo Zhang; Mahesh B Chandrasekharan; Zu-wen Sun; Matthew B Renfrow; Yanming Wang; Chenbei Chang; Hengbin Wang
Journal:  J Biol Chem       Date:  2010-12-23       Impact factor: 5.157

4.  The Cellular Protein Complex Associated with a Transforming Region of E1A Contains c-MYC.

Authors:  S Vijayalingam; T Subramanian; Ling-Jun Zhao; G Chinnadurai
Journal:  J Virol       Date:  2015-11-11       Impact factor: 5.103

5.  Transcriptional regulation. Meeting on regulatory mechanisms in eukaryotic transcription.

Authors:  Steven Hahn
Journal:  EMBO Rep       Date:  2008-06-06       Impact factor: 8.807

Review 6.  Insights into SAGA function during gene expression.

Authors:  Susana Rodríguez-Navarro
Journal:  EMBO Rep       Date:  2009-07-17       Impact factor: 8.807

7.  The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA.

Authors:  Munshi Azad Hossain; Julia M Claggett; Tiffany Nguyen; Tracy L Johnson
Journal:  RNA       Date:  2009-06-26       Impact factor: 4.942

8.  Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation.

Authors:  Vikki M Weake; Jamie O Dyer; Christopher Seidel; Andrew Box; Selene K Swanson; Allison Peak; Laurence Florens; Michael P Washburn; Susan M Abmayr; Jerry L Workman
Journal:  Genes Dev       Date:  2011-07-15       Impact factor: 11.361

Review 9.  Flickin' the ubiquitin switch: the role of H2B ubiquitylation in development.

Authors:  Duncan Edward Wright; Chen-Yi Wang; Cheng-Fu Kao
Journal:  Epigenetics       Date:  2011-10-01       Impact factor: 4.528

10.  A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression.

Authors:  Vikki M Weake; Selene K Swanson; Arcady Mushegian; Laurence Florens; Michael P Washburn; Susan M Abmayr; Jerry L Workman
Journal:  Genes Dev       Date:  2009-12-15       Impact factor: 11.361

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