Literature DB >> 22007669

Electronic structure of a low-spin heme/Cu peroxide complex: spin-state and spin-topology contributions to reactivity.

Matthew T Kieber-Emmons1, Yuqi Li, Zakaria Halime, Kenneth D Karlin, Edward I Solomon.   

Abstract

This study details the electronic structure of the <span class="Chemical">hemespan> class="Chemical">peroxocopper adduct {[(F8)Fe(DCHIm)]-O2-[Cu(AN)]}+ (LS(AN)) in which O2(2–) bridges the metals in a μ-1,2 or “end-on” configuration. LS(AN) is generated by addition of coordinating base to the parent complex {[(F8)Fe]-O2-[Cu(AN)]}+ (HS(AN)) in which the O2(2–) bridges the metals in an μ-η2:η2 or “side-on” mode. In addition to the structural change of the O2(2–) bridging geometry, coordination of the base changes the spin state of the heme fragment (from S = 5/2 in HS(AN) to S = 1/2 in LS(AN)) that results in an antiferromagnetically coupled diamagnetic ground state in LS(AN). The strong ligand field of the porphyrin modulates the high-spin to low-spin effect on Fe–peroxo bonding relative to nonheme complexes, which is important in the O–O bond cleavage process. On the basis of DFT calculations, the ground state of LS(AN) is dependent on the Fe–O–O–Cu dihedral angle, wherein acute angles (<~150°) yield an antiferromagnetically coupled electronic structure while more obtuse angles yield a ferromagnetic ground state. LS(AN) is diamagnetic and thus has an antiferromagnetically coupled ground state with a calculated Fe–O–O–Cu dihedral angle of 137°. The nature of the bonding in LS(AN) and the frontier molecular orbitals which lead to this magneto-structural correlation provide insight into possible spin topology contributions to O–O bond cleavage by cytochrome c oxidase.

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Year:  2011        PMID: 22007669      PMCID: PMC3226806          DOI: 10.1021/ic2018727

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  32 in total

1.  ATR-FTIR spectroscopy and isotope labeling of the PM intermediate of Paracoccus denitrificans cytochrome c oxidase.

Authors:  Masayo Iwaki; Anne Puustinen; Mårten Wikström; Peter R Rich
Journal:  Biochemistry       Date:  2004-11-16       Impact factor: 3.162

2.  Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans.

Authors:  S Iwata; C Ostermeier; B Ludwig; H Michel
Journal:  Nature       Date:  1995-08-24       Impact factor: 49.962

3.  Spectroscopic properties and electronic structure of low-spin Fe(III)-alkylperoxo complexes: homolytic cleavage of the O-O bond.

Authors:  N Lehnert; R Y Ho; L Que; E I Solomon
Journal:  J Am Chem Soc       Date:  2001-08-29       Impact factor: 15.419

4.  Primary intermediate in the reaction of oxygen with fully reduced cytochrome c oxidase.

Authors:  S W Han; Y C Ching; D L Rousseau
Journal:  Proc Natl Acad Sci U S A       Date:  1990-04       Impact factor: 11.205

5.  Single-turnover intermolecular reaction between a Fe(III)-superoxide-Cu(I) cytochrome c oxidase model and exogeneous Tyr244 mimics.

Authors:  James P Collman; Richard A Decréau; Christopher J Sunderland
Journal:  Chem Commun (Camb)       Date:  2006-08-09       Impact factor: 6.222

6.  Direct detection of a dioxygen adduct of cytochrome a3 in the mixed valence cytochrome oxidase/dioxygen reaction.

Authors:  C Varotsis; W H Woodruff; G T Babcock
Journal:  J Biol Chem       Date:  1990-07-05       Impact factor: 5.157

7.  Dioxygen activation and bond cleavage by mixed-valence cytochrome c oxidase.

Authors:  D A Proshlyakov; M A Pressler; G T Babcock
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

8.  A cytochrome C oxidase model catalyzes oxygen to water reduction under rate-limiting electron flux.

Authors:  James P Collman; Neal K Devaraj; Richard A Decréau; Ying Yang; Yi-Long Yan; Wataru Ebina; Todd A Eberspacher; Christopher E D Chidsey
Journal:  Science       Date:  2007-03-16       Impact factor: 47.728

9.  Reactivity studies on Fe(III)-(O2(2-))-Cu(II) compounds: influence of the ligand architecture and copper ligand denticity.

Authors:  Eduardo E Chufán; Biplab Mondal; Thirumanavelan Gandhi; Eunsuk Kim; Nick D Rubie; Pierre Moënne-Loccoz; Kenneth D Karlin
Journal:  Inorg Chem       Date:  2007-07-06       Impact factor: 5.165

10.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

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  16 in total

1.  Electrocatalytic O2-Reduction by Synthetic Cytochrome c Oxidase Mimics: Identification of a "Bridging Peroxo" Intermediate Involved in Facile 4e(-)/4H(+) O2-Reduction.

Authors:  Sudipta Chatterjee; Kushal Sengupta; Shabnam Hematian; Kenneth D Karlin; Abhishek Dey
Journal:  J Am Chem Soc       Date:  2015-09-30       Impact factor: 15.419

2.  Phenol-Induced O-O Bond Cleavage in a Low-Spin Heme-Peroxo-Copper Complex: Implications for O2 Reduction in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Matthew T Kieber-Emmons; Suzanne M Adam; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-06-06       Impact factor: 15.419

Review 3.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

4.  Geometric and Electronic Structure Contributions to O-O Cleavage and the Resultant Intermediate Generated in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Antonio C Roveda; Anex Jose; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-06-17       Impact factor: 15.419

Review 5.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

6.  A Mononuclear Nonheme Iron(III)-Peroxo Complex Binding Redox-Inactive Metal Ions.

Authors:  Yong-Min Lee; Suhee Bang; Yun Mi Kim; Jaeheung Cho; Seungwoo Hong; Takashi Nomura; Takashi Ogura; Oliver Troeppner; Ivana Ivanović-Burmazović; Ritimukta Sarangi; Shunichi Fukuzumi; Wonwoo Nam
Journal:  Chem Sci       Date:  2013-07-23       Impact factor: 9.825

7.  A broken-symmetry density functional study of structures, energies, and protonation states along the catalytic O-O bond cleavage pathway in ba3 cytochrome c oxidase from Thermus thermophilus.

Authors:  Wen-Ge Han Du; Andreas W Götz; Longhua Yang; Ross C Walker; Louis Noodleman
Journal:  Phys Chem Chem Phys       Date:  2016-04-20       Impact factor: 3.676

8.  Reactions of a heme-superoxo complex toward a cuprous chelate and •NO(g): CcO and NOD chemistry.

Authors:  Savita K Sharma; Patrick J Rogler; Kenneth D Karlin
Journal:  J Porphyr Phthalocyanines       Date:  2015 Jan-Mar       Impact factor: 1.811

9.  Density functional study for the bridged dinuclear center based on a high-resolution X-ray crystal structure of ba3 cytochrome c oxidase from Thermus thermophilus.

Authors:  Wen-Ge Han Du; Louis Noodleman
Journal:  Inorg Chem       Date:  2013-11-21       Impact factor: 5.165

Review 10.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

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