Literature DB >> 22004887

Mutational screening of the USH2A gene in Spanish USH patients reveals 23 novel pathogenic mutations.

Gema Garcia-Garcia1, Maria J Aparisi, Teresa Jaijo, Regina Rodrigo, Ana M Leon, Almudena Avila-Fernandez, Fiona Blanco-Kelly, Sara Bernal, Rafael Navarro, Manuel Diaz-Llopis, Montserrat Baiget, Carmen Ayuso, Jose M Millan, Elena Aller.   

Abstract

BACKGROUND: Usher Syndrome type II (USH2) is an autosomal recessive disorder, characterized by moderate to severe hearing impairment and retinitis pigmentosa (RP). Among the three genes implicated, mutations in the USH2A gene account for 74-90% of the USH2 cases.
METHODS: To identify the genetic cause of the disease and determine the frequency of USH2A mutations in a cohort of 88 unrelated USH Spanish patients, we carried out a mutation screening of the 72 coding exons of this gene by direct sequencing. Moreover, we performed functional minigene studies for those changes that were predicted to affect splicing.
RESULTS: As a result, a total of 144 DNA sequence variants were identified. Based upon previous studies, allele frequencies, segregation analysis, bioinformatics' predictions and in vitro experiments, 37 variants (23 of them novel) were classified as pathogenic mutations.
CONCLUSIONS: This report provide a wide spectrum of USH2A mutations and clinical features, including atypical Usher syndrome phenotypes resembling Usher syndrome type I. Considering only the patients clearly diagnosed with Usher syndrome type II, and results obtained in this and previous studies, we can state that mutations in USH2A are responsible for 76.1% of USH2 disease in patients of Spanish origin.

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Year:  2011        PMID: 22004887      PMCID: PMC3207874          DOI: 10.1186/1750-1172-6-65

Source DB:  PubMed          Journal:  Orphanet J Rare Dis        ISSN: 1750-1172            Impact factor:   4.123


  44 in total

1.  Identification of novel USH2A mutations: implications for the structure of USH2A protein.

Authors:  B Dreyer; L Tranebjaerg; T Rosenberg; M D Weston; W J Kimberling; O Nilssen
Journal:  Eur J Hum Genet       Date:  2000-07       Impact factor: 4.246

2.  Novel mutations in the long isoform of the USH2A gene in patients with Usher syndrome type II or non-syndromic retinitis pigmentosa.

Authors:  Terri L McGee; Babak Jian Seyedahmadi; Meredith O Sweeney; Thaddeus P Dryja; Eliot L Berson
Journal:  J Med Genet       Date:  2010-05-27       Impact factor: 6.318

3.  A novel gene for Usher syndrome type 2: mutations in the long isoform of whirlin are associated with retinitis pigmentosa and sensorineural hearing loss.

Authors:  Inga Ebermann; Hendrik P N Scholl; Peter Charbel Issa; Elvir Becirovic; Jürgen Lamprecht; Bernhard Jurklies; José M Millán; Elena Aller; Diana Mitter; Hanno Bolz
Journal:  Hum Genet       Date:  2006-12-15       Impact factor: 4.132

4.  Novel mutations in MYO7A and USH2A in Usher syndrome.

Authors:  Cécilia Maubaret; Jean-Michel Griffoin; Bernard Arnaud; Christian Hamel
Journal:  Ophthalmic Genet       Date:  2005-03       Impact factor: 1.803

5.  Functional analysis of splicing mutations in exon 7 of NF1 gene.

Authors:  Irene Bottillo; Alessandro De Luca; Annalisa Schirinzi; Valentina Guida; Isabella Torrente; Stefano Calvieri; Cristina Gervasini; Lidia Larizza; Antonio Pizzuti; Bruno Dallapiccola
Journal:  BMC Med Genet       Date:  2007-02-12       Impact factor: 2.103

6.  Mutation of a gene encoding a protein with extracellular matrix motifs in Usher syndrome type IIa.

Authors:  J D Eudy; M D Weston; S Yao; D M Hoover; H L Rehm; M Ma-Edmonds; D Yan; I Ahmad; J J Cheng; C Ayuso; C Cremers; S Davenport; C Moller; C B Talmadge; K W Beisel; M Tamayo; C C Morton; A Swaroop; W J Kimberling; J Sumegi
Journal:  Science       Date:  1998-06-12       Impact factor: 47.728

7.  USH2A mutation analysis in 70 Dutch families with Usher syndrome type II.

Authors:  Ronald J E Pennings; Heleen Te Brinke; Michael D Weston; Annemarie Claassen; Dana J Orten; Henriëtte Weekamp; Annelies Van Aarem; Patrick L M Huygen; August F Deutman; Lies H Hoefsloot; Frans P M Cremers; Cor W R J Cremers; William J Kimberling; Hannie Kremer
Journal:  Hum Mutat       Date:  2004-08       Impact factor: 4.878

8.  Genetic analysis of 2299delG and C759F mutations (USH2A) in patients with visual and/or auditory impairments.

Authors:  Elena Aller; Carmen Nájera; José María Millán; Juan S Oltra; Herminio Pérez-Garrigues; Concepción Vilela; Amparo Navea; Magdalena Beneyto
Journal:  Eur J Hum Genet       Date:  2004-05       Impact factor: 4.246

9.  Prevalence and geographical distribution of Usher syndrome in Germany.

Authors:  Ulrich H M Spandau; Klaus Rohrschneider
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2002-05-23       Impact factor: 3.117

10.  Development of a genotyping microarray for Usher syndrome.

Authors:  Frans P M Cremers; William J Kimberling; Maigi Külm; Arjan P de Brouwer; Erwin van Wijk; Heleen te Brinke; Cor W R J Cremers; Lies H Hoefsloot; Sandro Banfi; Francesca Simonelli; Johannes C Fleischhauer; Wolfgang Berger; Phil M Kelley; Elene Haralambous; Maria Bitner-Glindzicz; Andrew R Webster; Zubin Saihan; Elfride De Baere; Bart P Leroy; Giuliana Silvestri; Gareth J McKay; Robert K Koenekoop; Jose M Millan; Thomas Rosenberg; Tarja Joensuu; Eeva-Marja Sankila; Dominique Weil; Mike D Weston; Bernd Wissinger; Hannie Kremer
Journal:  J Med Genet       Date:  2006-09-08       Impact factor: 6.318

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  30 in total

Review 1.  Atypical and ultra-rare Usher syndrome: a review.

Authors:  Rosalie M Nolen; Robert B Hufnagel; Thomas B Friedman; Amy E Turriff; Carmen C Brewer; Christopher K Zalewski; Kelly A King; Talah T Wafa; Andrew J Griffith; Brian P Brooks; Wadih M Zein
Journal:  Ophthalmic Genet       Date:  2020-05-06       Impact factor: 1.803

2.  Application of a high-throughput genotyping method for loci exclusion in non-consanguineous Australian pedigrees with autosomal recessive retinitis pigmentosa.

Authors:  Rachel L Paterson; John N De Roach; Terri L McLaren; Alex W Hewitt; Ling Hoffmann; Tina M Lamey
Journal:  Mol Vis       Date:  2012-07-25       Impact factor: 2.367

3.  A detailed clinical and molecular survey of subjects with nonsyndromic USH2A retinopathy reveals an allelic hierarchy of disease-causing variants.

Authors:  Eva Lenassi; Ajoy Vincent; Zheng Li; Zubin Saihan; Alison J Coffey; Heather B Steele-Stallard; Anthony T Moore; Karen P Steel; Linda M Luxon; Elise Héon; Maria Bitner-Glindzicz; Andrew R Webster
Journal:  Eur J Hum Genet       Date:  2015-02-04       Impact factor: 4.246

4.  The Sinocyclocheilus cavefish genome provides insights into cave adaptation.

Authors:  Junxing Yang; Xiaoli Chen; Jie Bai; Dongming Fang; Ying Qiu; Wansheng Jiang; Hui Yuan; Chao Bian; Jiang Lu; Shiyang He; Xiaofu Pan; Yaolei Zhang; Xiaoai Wang; Xinxin You; Yongsi Wang; Ying Sun; Danqing Mao; Yong Liu; Guangyi Fan; He Zhang; Xiaoyong Chen; Xinhui Zhang; Lanping Zheng; Jintu Wang; Le Cheng; Jieming Chen; Zhiqiang Ruan; Jia Li; Hui Yu; Chao Peng; Xingyu Ma; Junmin Xu; You He; Zhengfeng Xu; Pao Xu; Jian Wang; Huanming Yang; Jun Wang; Tony Whitten; Xun Xu; Qiong Shi
Journal:  BMC Biol       Date:  2016-01-04       Impact factor: 7.431

5.  High Diagnostic Yield of Whole Exome Sequencing in Participants With Retinal Dystrophies in a Clinical Ophthalmology Setting.

Authors:  Kristy Lee; Jonathan S Berg; Laura Milko; Kristy Crooks; Mei Lu; Chris Bizon; Phillips Owen; Kirk C Wilhelmsen; Karen E Weck; James P Evans; Seema Garg
Journal:  Am J Ophthalmol       Date:  2015-04-22       Impact factor: 5.258

6.  The contribution of GPR98 and DFNB31 genes to a Spanish Usher syndrome type 2 cohort.

Authors:  Gema García-García; Thomas Besnard; David Baux; Christel Vaché; Elena Aller; Sue Malcolm; Mireille Claustres; Jose M Millan; Anne-Françoise Roux
Journal:  Mol Vis       Date:  2013-02-13       Impact factor: 2.367

7.  Screening for duplications, deletions and a common intronic mutation detects 35% of second mutations in patients with USH2A monoallelic mutations on Sanger sequencing.

Authors:  Heather B Steele-Stallard; Polona Le Quesne Stabej; Eva Lenassi; Linda M Luxon; Mireille Claustres; Anne-Francoise Roux; Andrew R Webster; Maria Bitner-Glindzicz
Journal:  Orphanet J Rare Dis       Date:  2013-08-08       Impact factor: 4.123

8.  Analysis of the Ush2a gene in medaka fish (Oryzias latipes).

Authors:  Elena Aller; Ana V Sánchez-Sánchez; Javier U Chicote; Gema García-García; Patricia Udaondo; Laura Cavallé; Marina Piquer-Gil; Antonio García-España; Manuel Díaz-Llopis; José M Millán; José L Mullor
Journal:  PLoS One       Date:  2013-09-23       Impact factor: 3.240

9.  Experience of targeted Usher exome sequencing as a clinical test.

Authors:  Thomas Besnard; Gema García-García; David Baux; Christel Vaché; Valérie Faugère; Lise Larrieu; Susana Léonard; Jose M Millan; Sue Malcolm; Mireille Claustres; Anne-Françoise Roux
Journal:  Mol Genet Genomic Med       Date:  2013-07-10       Impact factor: 2.183

10.  Combined genetic and high-throughput strategies for molecular diagnosis of inherited retinal dystrophies.

Authors:  Marta de Castro-Miró; Esther Pomares; Laura Lorés-Motta; Raul Tonda; Joaquín Dopazo; Gemma Marfany; Roser Gonzàlez-Duarte
Journal:  PLoS One       Date:  2014-02-07       Impact factor: 3.240

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