Literature DB >> 22001912

Rapid detection of gene mutations responsible for non-syndromic aortic aneurysm and dissection using two different methods: resequencing microarray technology and next-generation sequencing.

Haruya Sakai1, Shinichi Suzuki, Takeshi Mizuguchi, Kiyotaka Imoto, Yuki Yamashita, Hiroshi Doi, Masakazu Kikuchi, Yoshinori Tsurusaki, Hirotomo Saitsu, Noriko Miyake, Munetaka Masuda, Naomichi Matsumoto.   

Abstract

Aortic aneurysm and/or dissection (AAD) is a life-threatening condition, and several syndromes are known to be related to AAD. In this study, two new technologies, resequencing array technology (ResAT) and next-generation sequencing (NGS), were used to analyze eight genes associated with syndromic AAD in 70 patients with non-syndromic AAD. Eighteen sequence variants were detected using both ResAT and NGS. In addition one of these sequence variants was detected by ResAT only and two additional variants by NGS only. Three of the 18 variants are likely to be pathogenic (in 4.3% of AAD patients and in 8.6% of a subset of patients with thoracic AAD), highlighting the importance of genetic analysis in non-syndromic AAD. ResAT and NGS similarly detected most, but not all, of the variants. Resequencing array technology was a rapid and efficient method for detecting most nucleotide substitutions, but was unable to detect short insertions/deletions, and it is impractical to update custom arrays frequently. Next-generation sequencing was able to detect almost all types of mutation, but requires improved informatics methods.

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Year:  2011        PMID: 22001912     DOI: 10.1007/s00439-011-1105-7

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  32 in total

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2.  Marfan syndrome caused by a recurrent de novo missense mutation in the fibrillin gene.

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Journal:  Nature       Date:  1991-07-25       Impact factor: 49.962

3.  Mapping short DNA sequencing reads and calling variants using mapping quality scores.

Authors:  Heng Li; Jue Ruan; Richard Durbin
Journal:  Genome Res       Date:  2008-08-19       Impact factor: 9.043

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Journal:  Bioinformatics       Date:  2010-02-09       Impact factor: 6.937

5.  Rapid detection of genetic variants in hypertrophic cardiomyopathy by custom DNA resequencing array in clinical practice.

Authors:  Siv Fokstuen; Analia Munoz; Paola Melacini; Sabino Iliceto; Andreas Perrot; Cemil Ozcelik; Xavier Jeanrenaud; Claudine Rieubland; Martin Farr; Lothar Faber; Ulrich Sigwart; François Mach; René Lerch; Stylianos E Antonarakis; Jean-Louis Blouin
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6.  G to T transversion at position +5 of a splice donor site causes skipping of the preceding exon in the type III procollagen transcripts of a patient with Ehlers-Danlos syndrome type IV.

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7.  A large duplication in the gene for lysyl hydroxylase accounts for the type VI variant of Ehlers-Danlos syndrome in two siblings.

Authors:  T Hautala; J Heikkinen; K I Kivirikko; R Myllylä
Journal:  Genomics       Date:  1993-02       Impact factor: 5.736

8.  Array-based resequencing for mutations causing familial hypercholesterolemia.

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Journal:  Atherosclerosis       Date:  2011-03-03       Impact factor: 5.162

9.  Semi-automated library preparation for high-throughput DNA sequencing platforms.

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Journal:  J Biomed Biotechnol       Date:  2010-06-08

10.  Mutations in the facilitative glucose transporter GLUT10 alter angiogenesis and cause arterial tortuosity syndrome.

Authors:  Paul J Coucke; Andy Willaert; Marja W Wessels; Bert Callewaert; Nicoletta Zoppi; Julie De Backer; Joyce E Fox; Grazia M S Mancini; Marios Kambouris; Rita Gardella; Fabio Facchetti; Patrick J Willems; Ramses Forsyth; Harry C Dietz; Sergio Barlati; Marina Colombi; Bart Loeys; Anne De Paepe
Journal:  Nat Genet       Date:  2006-03-19       Impact factor: 38.330

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  5 in total

1.  Next generation sequencing in cardiovascular diseases.

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Journal:  World J Cardiol       Date:  2012-10-26

2.  Whole-exome sequencing reveals known and novel variants in a cohort of intracranial vertebral-basilar artery dissection (IVAD).

Authors:  Kun Wang; Sen Zhao; Qianqian Zhang; Jian Yuan; Jiaqi Liu; Xinghuan Ding; Xiaofei Song; Jiachen Lin; Renqian Du; Yangzhong Zhou; Michihiko Sugimoto; Weisheng Chen; Bo Yuan; Jian Liu; Zihui Yan; Bowen Liu; Yisen Zhang; Xiaoxin Li; Yuchen Niu; Bo Long; Yiping Shen; Shuyang Zhang; Kuniya Abe; Jianzhong Su; Zhihong Wu; Nan Wu; Pengfei Liu; Xinjian Yang
Journal:  J Hum Genet       Date:  2018-08-16       Impact factor: 3.172

3.  Alpha-actin-2 mutations in Chinese patients with a non-syndromatic thoracic aortic aneurysm.

Authors:  Tie Ke; Meng Han; Miao Zhao; Qing Kenneth Wang; Huazhi Zhang; Yuanyuan Zhao; Xinlong Ruan; Hui Li; Chengqi Xu; Tucheng Sun
Journal:  BMC Med Genet       Date:  2016-07-18       Impact factor: 2.103

4.  Management of Cervical Kyphotic Deformity Associated With Loeys-Dietz Vasculopathy and Cardiac Transplantation: Case Report, Literature Review, and Strategies for Complex Skeletal Dysplasias.

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Journal:  Cureus       Date:  2021-12-18

5.  Mutation survey of candidate genes in 40 Chinese patients with congenital ectopia lentis.

Authors:  Jie Li; Xiaoyun Jia; Shiqiang Li; Shaohua Fang; Xiangming Guo
Journal:  Mol Vis       Date:  2014-07-18       Impact factor: 2.367

  5 in total

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