Literature DB >> 22000006

Genome-wide "re"-modeling of nucleosome positions.

Ronen Sadeh1, C David Allis.   

Abstract

Two recent studies mapped nucleosomes across the yeast and human genomes, teasing apart the relative contributions of DNA sequence and chromatin remodelers to nucleosome organization. These data suggest two emerging models: chromatin remodelers position nucleosomes around transcriptional start sites in yeast, and a few "locked" nucleosomes may serve as barriers from which nucleosome arrays emanate in human genomes.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID： 22000006      PMCID： PMC3207319          DOI： 10.1016/j.cell.2011.09.042

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


  23 in total

1.  The structure of DNA in the nucleosome core.

Authors:  Timothy J Richmond; Curt A Davey
Journal:  Nature       Date:  2003-05-08       Impact factor: 49.962

2.  A genomic code for nucleosome positioning.

Authors:  Eran Segal; Yvonne Fondufe-Mittendorf; Lingyi Chen; AnnChristine Thåström; Yair Field; Irene K Moore; Ji-Ping Z Wang; Jonathan Widom
Journal:  Nature       Date:  2006-07-19       Impact factor: 49.962

Review 3.  The role of chromatin during transcription.

Authors:  Bing Li; Michael Carey; Jerry L Workman
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

4.  Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation.

Authors:  Yuhong Fan; Tatiana Nikitina; Jie Zhao; Tomara J Fleury; Riddhi Bhattacharyya; Eric E Bouhassira; Arnold Stein; Christopher L Woodcock; Arthur I Skoultchi
Journal:  Cell       Date:  2005-12-29       Impact factor: 41.582

5.  Chromatin remodelling at promoters suppresses antisense transcription.

Authors:  Iestyn Whitehouse; Oliver J Rando; Jeff Delrow; Toshio Tsukiyama
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

6.  Sequence periodicities in chicken nucleosome core DNA.

Authors:  S C Satchwell; H R Drew; A A Travers
Journal:  J Mol Biol       Date:  1986-10-20       Impact factor: 5.469

7.  Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast.

Authors:  M J Fedor; N F Lue; R D Kornberg
Journal:  J Mol Biol       Date:  1988-11-05       Impact factor: 5.469

8.  ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor.

Authors:  T Tsukiyama; P B Becker; C Wu
Journal:  Nature       Date:  1994-02-10       Impact factor: 49.962

9.  Dynamics of replication-independent histone turnover in budding yeast.

Authors:  Michael F Dion; Tommy Kaplan; Minkyu Kim; Stephen Buratowski; Nir Friedman; Oliver J Rando
Journal:  Science       Date:  2007-03-09       Impact factor: 47.728

10.  Determinants of nucleosome organization in primary human cells.

Authors:  Anton Valouev; Steven M Johnson; Scott D Boyd; Cheryl L Smith; Andrew Z Fire; Arend Sidow
Journal:  Nature       Date:  2011-05-22       Impact factor: 49.962
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  40 in total

1.  The INO80 Complex Requires the Arp5-Ies6 Subcomplex for Chromatin Remodeling and Metabolic Regulation.

Authors:  Wei Yao; Devin A King; Sean L Beckwith; Graeme J Gowans; Kuangyu Yen; Coral Zhou; Ashby J Morrison
Journal:  Mol Cell Biol       Date:  2016-01-11       Impact factor: 4.272

2.  The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter-proximal nucleosomes.

Authors:  Boseon Byeon; Wei Wang; Artem Barski; Ryan T Ranallo; Kan Bao; Dustin E Schones; Keji Zhao; Carl Wu; Wei-Hua Wu
Journal:  J Biol Chem       Date:  2013-06-18       Impact factor: 5.157

3.  Coupling of replisome movement with nucleosome dynamics can contribute to the parent-daughter information transfer.

Authors:  Tripti Bameta; Dibyendu Das; Ranjith Padinhateeri
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971

4.  Genome-wide nucleosome positioning during embryonic stem cell development.

Authors:  Vladimir B Teif; Yevhen Vainshtein; Maïwen Caudron-Herger; Jan-Philipp Mallm; Caroline Marth; Thomas Höfer; Karsten Rippe
Journal:  Nat Struct Mol Biol       Date:  2012-10-21       Impact factor: 15.369

Review 5.  Histone regulation in the CNS: basic principles of epigenetic plasticity.

Authors:  Ian Maze; Kyung-Min Noh; C David Allis
Journal:  Neuropsychopharmacology       Date:  2012-07-25       Impact factor: 7.853

6.  Nucleosome eviction in mitosis assists condensin loading and chromosome condensation.

Authors:  Esther Toselli-Mollereau; Xavier Robellet; Lydia Fauque; Sébastien Lemaire; Christoph Schiklenk; Carlo Klein; Clémence Hocquet; Pénélope Legros; Lia N'Guyen; Léo Mouillard; Emilie Chautard; Didier Auboeuf; Christian H Haering; Pascal Bernard
Journal:  EMBO J       Date:  2016-06-06       Impact factor: 11.598

Review 7.  Core promoters in transcription: old problem, new insights.

Authors:  Ananda L Roy; Dinah S Singer
Journal:  Trends Biochem Sci       Date:  2015-02-10       Impact factor: 13.807

Review 8.  Linking genome to epigenome.

Authors:  Guo-Cheng Yuan
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2012-02-17

9.  Trichostatin-A modulates claudin-1 mRNA stability through the modulation of Hu antigen R and tristetraprolin in colon cancer cells.

Authors:  Ashok Sharma; Ajaz A Bhat; Moorthy Krishnan; Amar B Singh; Punita Dhawan
Journal:  Carcinogenesis       Date:  2013-07-23       Impact factor: 4.944

Review 10.  Epigenetics and chromatin dynamics: a review and a paradigm for functional disorders.

Authors:  T Ordog; S A Syed; Y Hayashi; D T Asuzu
Journal:  Neurogastroenterol Motil       Date:  2012-10-24       Impact factor: 3.598
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