| Literature DB >> 21999170 |
M Dolores Bargues1, L Carolina González, Patricio Artigas, Santiago Mas-Coma.
Abstract
BACKGROUND: Human and animal fascioliasis poses serious public health problems in South America. In Venezuela, livestock infection represents an important veterinary problem whereas there appear to be few human cases reported, most of which are passively detected in health centres. However, results of recent surveys suggest that the situation may be underestimated in particular areas. To obtain a baseline for future fascioliasis assessment, studies were undertaken by means of rDNA ITS-2 and ITS-1 and mtDNA cox1 sequencing to clarify the specific status of Venezuelan lymnaeids, their geographical distribution and fascioliasis transmission capacity, by comparison with other American countries and other continents.Entities:
Mesh:
Year: 2011 PMID: 21999170 PMCID: PMC3213164 DOI: 10.1186/1756-3305-4-200
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Figure 1Geographical distribution of fascioliasis in Venezuela. Map of Venezuela showing localities where liver fluke infection in humans, livestock and lymnaeid snails has been reported.
Nuclear ribosomal and mitochondrial DNA haplotype code identification for lymnaeid species and populations studied from Venezuela
| Lymnaeid species | Populations | Preliminary classification | rDNA ITS-2 | rDNA ITS-1 | mtDNA | Combined H nomenclature | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locality (State) | Coordinates and altitude | Habitat | No. snails (month of collection) | H | H | H** | ||||||
| Magdaleno, Lago Valencia-Maracay (Aragua) | 10°07'36" N 67°35'42" W 428 m | water canal Calicanto flowing into the large Lake of Valencia-Maracay | 2 (November) | 4* | GenBank: | B | EMBL: | b | EMBL: | L.cub-4B, | ||
| Mucura, Lago Valencia-Maracay (Aragua) | 10°06'38" N; 67°28'47" W 410 m | pool of stagnant water close to the large Lake of Valencia-Maracay | 5 (November) | 4* | GenBank: | B | EMBL: | b | EMBL: | L.cub-4B, | ||
| El Joque, Jají (Mérida) | 8°35'10" N; 71°20'36" W 1995 m | irrigation canal in dairy cattle farm | 40 (June) | 2 | EMBL: | B | EMBL: | b | EMBL: | L.cub-2B, | ||
| Estanques Lagunillas (Mérida) | °30'15" N; 71°23'41" W 1032 m | connecting canal from permanent pond inside urban area | 15 (March) | 4* | GenBank: | B | EMBL: | b | EMBL: | L.cub-4B, | ||
| La Linda, Güigüe (Carabobo) | 10°04'53" N; 67°47'15" W 450 m | water canal at the southern part of the Lake of Valencia-Maracay | 3 (May) | 2* | GenBank: | A | EMBL: | c* | GenBank: | L.neo-2A, | ||
| Finca El Arenal, Tucacas (Falcón) | 10°43'29" N; 68°23'25" W 30 m | irrigation canals from Aroa river in Parcelas Agrotécnicas of a farm, in the way to Las Lapas | 82 (May) | 2* | GenBank: | A | EMBL: | d* | GenBank: | L.neo-2A, | ||
| Iglesia Monterrey (Mérida) | 8°38'39" N; 71°07'24" W 1900 m | irrigation canal along pasture grassland | 47 (March) | 2 | EMBL: | D* | GenBank: | b* | GenBank: | G.tru-2D, | ||
| San Rafael, Mucuchies A (Mérida) | 8°44'42" N; 70°55'23" W 3150 m | grassland with slight slope flooded from small stream | 250 (March) | 2 | EMBL: | D* | GenBank: | b* | GenBank: | G.tru-2D, | ||
| San Rafael, Mucuchies B (Mérida) | 8°44'46" N; 70°55'21" W 3200 m | small stream south from the village | 225 (March) | 2 | EMBL: | D* | GenBank: | b* | GenBank: | G.tru-2D, | ||
| San Isidro, Apartaderos (Mérida) | 8°47'48" N; 70°51'33" W 3500 m | small stream behind the school of children San Isidro | 154 (March) | 2 | EMBL: | D* | GenBank: | b* | GenBank: | G.tru-2D, | ||
| Paso del Cóndor (Mérida) | 8°50'41" N; 70°48'41" W 4080 m | road gutter with water descending from mountain fountain | 7 (March) | 2 | EMBL: | D* | GenBank: | b* | GenBank: | G.tru-2D, | ||
| Hotel Valle Grande (Mérida) | 8°40'28" N; 71°06'03" W 2200 m | small gutter besides external wall of hotel building | 215 (March) | 1 | GenBank: | A | GenBank: | a | GenBank: | L.schi-1A, cox1a | ||
| Laguna Fe y Alegría (Mérida) | 8°37'29" N; 70°49'33" W 1840 m | wild grass and stones besides small stream of fast running water | 69 (March) | 1 | GenBank: | A | GenBank: | a | GenBank: | L.schi-1A, cox1a | ||
| La Trampa (Mérida) | 8°32'25" N; 71°27'23" W 2170 m | besides small water collection on hillside | 12 (May) | 1 | GenBank: | A | GenBank: | a | GenBank: | L.schi-1A, cox1a | ||
| Laguna Mucubaji (Mérida) | 8°47'52" N; 70°49'32" W 3550 m | surroundings and shore of large natural pool | 29 (October) | 1 | EMBL: | A | EMBL: | a | EMBL: | L.mer-1A, cox1a | ||
| La Linda, Güigüe (Carabobo) | 10°04'53" N; 67°47'15" W 450 m | water canal at the southern part of the Lake of Valencia-Maracay | 2 (May) | 2 | EMBL: | A | EMBL: | a | EMBL: | P.col-2A, cox1a | ||
| El Valle (Mérida) | 8°38'41" N; 71°07'24" W 1930 m | irrigation canal along pasture grassland close to Iglesia Monterrey | 4 (March) | Lymnaeidae gen. sp. | 1 | EMBL: | A | EMBL: | a | EMBL: | P.col-1A, cox1a | |
H = haplotype; * = new haplotypes for the corresponding lymnaeid species; ** = only preliminary haplotypes due to incomplete gene sequence; *** = material collected, alcohol-fixed, preliminarily classified and furnished by colleagues
Figure 2Nucleotide variable positions and microsatellites found in the ITS-2 sequence of the . Position = numbers (to be read in vertical) refer to variable positions obtained in the alignment made with MEGA 4.0. Identical = .; Indel = -. *EMBL: AM412223; ** EMBL: FN182200; *** EMBL: FN182201.
Figure 3Nucleotide and amino acid differences found in the mtDNA . Position = numbers (to be read in vertical) refer to variable positions obtained in the alignment made with MEGA 4.0. Nt = nucleotides; Aa = amino acids; Identical = .; Indel = -. Haplotype codes only provisional due to incomplete sequences of the gene. *EMBL: AM494008; **EMBL: FN356741.
Figure 4Nucleotide differences found in the mtDNA . Position = numbers (to be read in vertical) refer to variable positions obtained in the alignment made with MEGA 4.0. Nt = nucleotides; Identical = .; Indel = -. Haplotype codes only provisional due to incomplete sequences of the gene. *EMBL: AM494011; **GenBank: EU818799 (incomplete sequence: no haplotype available).
Figure 5Nucleotide and amino acid differences found in the mtDNA . Position = numbers (to be read in vertical) refer to variable positions obtained in the alignment made with MEGA 4.0. Nt = nucleotides; Aa = amino acids; Identical = .; Indel = -. Haplotype codes only provisional due to incomplete sequences of the gene. *GenBank: JF272607, Iran, Spain, Egypt, Mexico, Peru, Dominican Republic; **GenBank: JF272608; ***GenBank: JF272609; ****GenBank: JF272610.
Figure 6Nucleotide and amino acid differences found in the mtDNA . Position = numbers (to be read in vertical) refer to variable positions obtained in the alignment made with MEGA 4.0. Nt = nucleotides; Aa = amino acids; Identical = .; Indel = -. Haplotype codes only provisional due to incomplete sequences of the gene. *EMBL: FN598161; **EMBL:FN598162; ***EMBL: FN598163.
Figure 7Phylogenetic analysis of lymnaeid species from Venezuela. Phylogenetic tree of lymnaeid species studied, obtained using the planorbid Biomphalaria pfeifferi as outgroup, based on maximum-likelihood (ML) estimates. Scale bar indicates the number of substitutions per sequence position. Support for nodes a/b/c: a: bootstrap with NJ reconstruction using PAUP with ML distance and 1000 replicates; b: bootstrap with ML reconstruction using PAUP with 1000 heuristic replicates; c: Bayesian posterior probability with ML model using MrBayes.