Literature DB >> 21994931

Genome sequence of Desulfosporosinus sp. OT, an acidophilic sulfate-reducing bacterium from copper mining waste in Norilsk, Northern Siberia.

Helge K Abicht1, Stefano Mancini, Olga V Karnachuk, Marc Solioz.   

Abstract

We have sequenced the genome of Desulfosporosinus sp. OT, a Gram-positive, acidophilic sulfate-reducing Firmicute isolated from copper tailing sediment in the Norilsk mining-smelting area in Northern Siberia, Russia. This represents the first sequenced genome of a Desulfosporosinus species. The genome has a size of 5.7 Mb and encodes 6,222 putative proteins.

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Year:  2011        PMID： 21994931      PMCID： PMC3194917          DOI： 10.1128/JB.06018-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Significant association between sulfate-reducing bacteria and uranium-reducing microbial communities as revealed by a combined massively parallel sequencing-indicator species approach.

Authors:  Erick Cardenas; Wei-Min Wu; Mary Beth Leigh; Jack Carley; Sue Carroll; Terry Gentry; Jian Luo; David Watson; Baohua Gu; Matthew Ginder-Vogel; Peter K Kitanidis; Philip M Jardine; Jizhong Zhou; Craig S Criddle; Terence L Marsh; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

2.  Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage.

Authors:  John W Moreau; Robert A Zierenberg; Jillian F Banfield
Journal:  Appl Environ Microbiol       Date:  2010-05-14       Impact factor: 4.792

3.  CPx-type ATPases: a class of P-type ATPases that pump heavy metals.

Authors:  M Solioz; C Vulpe
Journal:  Trends Biochem Sci       Date:  1996-07       Impact factor: 13.807

4.  Desulfosporosinus acidiphilus sp. nov.: a moderately acidophilic sulfate-reducing bacterium isolated from acid mining drainage sediments : New taxa: Firmicutes (Class Clostridia, Order Clostridiales, Family Peptococcaceae).

Authors:  Didier Alazard; Manon Joseph; Fabienne Battaglia-Brunet; Jean-Luc Cayol; Bernard Ollivier
Journal:  Extremophiles       Date:  2010-04-01       Impact factor: 2.395

5.  Heavy metal tolerance of Fe(III)-reducing microbial communities in contaminated creek bank soils.

Authors:  Eva-Maria Burkhardt; Sebastian Bischoff; Denise M Akob; Georg Büchel; Kirsten Küsel
Journal:  Appl Environ Microbiol       Date:  2011-03-04       Impact factor: 4.792

6.  Solution structure of CopC: a cupredoxin-like protein involved in copper homeostasis.

Authors:  Fabio Arnesano; Lucia Banci; Ivano Bertini; Andrew R Thompsett
Journal:  Structure       Date:  2002-10       Impact factor: 5.006

7.  Copper ions stimulate polyphosphate degradation and phosphate efflux in Acidithiobacillus ferrooxidans.

Authors:  Sergio Alvarez; Carlos A Jerez
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

8.  Copper resistance in Desulfovibrio strain R2.

Authors:  Olia V Karnachuk; Svetlana Y Kurochkina; Duongruitai Nicomrat; Yulia A Frank; Denis A Ivasenko; Elena A Phyllipenko; Olli H Tuovinen
Journal:  Antonie Van Leeuwenhoek       Date:  2003       Impact factor: 2.271

Review 9.  Escherichia coli mechanisms of copper homeostasis in a changing environment.

Authors:  Christopher Rensing; Gregor Grass
Journal:  FEMS Microbiol Rev       Date:  2003-06       Impact factor: 16.408

10.  A 'rare biosphere' microorganism contributes to sulfate reduction in a peatland.

Authors:  Michael Pester; Norbert Bittner; Pinsurang Deevong; Michael Wagner; Alexander Loy
Journal:  ISME J       Date:  2010-06-10       Impact factor: 10.302
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  10 in total

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Journal:  ISME J       Date:  2012-09-13       Impact factor: 10.302

2.  Microbial diversity and functional response to the redox dynamics of pyrite-rich sediment and the impact of preload surcharge.

Authors:  O Karikari-Yeboah; W Skinner; J Addai-Mensah
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3.  vanI: a novel D-Ala-D-Lac vancomycin resistance gene cluster found in Desulfitobacterium hafniense.

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Journal:  Microb Biotechnol       Date:  2014-07-05       Impact factor: 5.813

4.  Genome sequence of the copper resistant and acid-tolerant Desulfosporosinus sp. BG isolated from the tailings of a molybdenum-tungsten mine in the Transbaikal area.

Authors:  Olga V Karnachuk; Vitalii V Kadnikov; Inna A Panova; Andrey V Mardanov; Alexey V Beletsky; Erzhena V Danilova; Marat R Avakyan; Nikolai V Ravin
Journal:  Genom Data       Date:  2016-12-29

5.  Genome sequence of the acid-tolerant Desulfovibrio sp. DV isolated from the sediments of a Pb-Zn mine tailings dam in the Chita region, Russia.

Authors:  Anastasiia Kovaliova; Vitaly V Kadnikov; Dmitrii V Antsiferov; Alexey V Beletsky; Ehrzena V Danilova; Marat R Avakyan; Andrey V Mardanov; Olga V Karnachuk
Journal:  Genom Data       Date:  2017-01-28

6.  Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member.

Authors:  Bela Hausmann; Claus Pelikan; Thomas Rattei; Alexander Loy; Michael Pester
Journal:  mBio       Date:  2019-02-12       Impact factor: 7.867

7.  Insights into ecological role of a new deltaproteobacterial order Candidatus Acidulodesulfobacterales by metagenomics and metatranscriptomics.

Authors:  Sha Tan; Jun Liu; Yun Fang; Brian P Hedlund; Zheng-Han Lian; Li-Ying Huang; Jin-Tian Li; Li-Nan Huang; Wen-Jun Li; Hong-Chen Jiang; Hai-Liang Dong; Wen-Sheng Shu
Journal:  ISME J       Date:  2019-04-08       Impact factor: 10.302

8.  Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T.

Authors:  Michael Pester; Evelyne Brambilla; Didier Alazard; Thomas Rattei; Thomas Weinmaier; James Han; Susan Lucas; Alla Lapidus; Jan-Fang Cheng; Lynne Goodwin; Sam Pitluck; Lin Peters; Galina Ovchinnikova; Hazuki Teshima; John C Detter; Cliff S Han; Roxanne Tapia; Miriam L Land; Loren Hauser; Nikos C Kyrpides; Natalia N Ivanova; Ioanna Pagani; Marcel Huntmann; Chia-Lin Wei; Karen W Davenport; Hajnalka Daligault; Patrick S G Chain; Amy Chen; Konstantinos Mavromatis; Victor Markowitz; Ernest Szeto; Natalia Mikhailova; Amrita Pati; Michael Wagner; Tanja Woyke; Bernard Ollivier; Hans-Peter Klenk; Stefan Spring; Alexander Loy
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

9.  Core Sulphate-Reducing Microorganisms in Metal-Removing Semi-Passive Biochemical Reactors and the Co-Occurrence of Methanogens.

Authors:  Maryam Rezadehbashi; Susan A Baldwin
Journal:  Microorganisms       Date:  2018-02-23

10.  Genome-resolved evidence for functionally redundant communities and novel nitrogen fixers in the deyin-1 hydrothermal field, Mid-Atlantic Ridge.

Authors:  Jie Pan; Wei Xu; Zhichao Zhou; Zongze Shao; Chunming Dong; Lirui Liu; Zhuhua Luo; Meng Li
Journal:  Microbiome       Date:  2022-01-19       Impact factor: 16.837
  10 in total

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