Literature DB >> 21994922

Genome sequence of the tobacco bacterial wilt pathogen Ralstonia solanacearum.

Zefeng Li1, Sanling Wu, Xuefei Bai, Yun Liu, Jianfei Lu, Yong Liu, Bingguang Xiao, Xiuping Lu, Longjiang Fan.   

Abstract

Ralstonia solanacearum is a causal agent of plant bacterial wilt with thousands of distinct strains in a heterogeneous species complex. Here we report the genome sequence of a phylotype IB strain, Y45, isolated from tobacco (Nicotiana tabacum) in China. Compared with the published genomes of eight strains which were isolated from other hosts and habitats, 794 specific genes and many rearrangements/inversion events were identified in the tobacco strain, demonstrating that this strain represents an important node within the R. solanacearum complex.

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Year:  2011        PMID： 21994922      PMCID： PMC3194909          DOI： 10.1128/JB.06009-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

1.  Genome sequence of the plant pathogen Ralstonia solanacearum.

Authors:  M Salanoubat; S Genin; F Artiguenave; J Gouzy; S Mangenot; M Arlat; A Billault; P Brottier; J C Camus; L Cattolico; M Chandler; N Choisne; C Claudel-Renard; S Cunnac; N Demange; C Gaspin; M Lavie; A Moisan; C Robert; W Saurin; T Schiex; P Siguier; P Thébault; M Whalen; P Wincker; M Levy; J Weissenbach; C A Boucher
Journal:  Nature       Date:  2002-01-31       Impact factor: 49.962

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Authors:  Koichiro Tamura; Joel Dudley; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

4.  SOAP2: an improved ultrafast tool for short read alignment.

Authors:  Ruiqiang Li; Chang Yu; Yingrui Li; Tak-Wah Lam; Siu-Ming Yiu; Karsten Kristiansen; Jun Wang
Journal:  Bioinformatics       Date:  2009-06-03       Impact factor: 6.937

5.  Complete genome sequence of the plant pathogen Ralstonia solanacearum strain Po82.

Authors:  Jin Xu; Hua-jun Zheng; Lei Liu; Zhe-chao Pan; Philippe Prior; Biao Tang; Jing-sheng Xu; Hao Zhang; Qian Tian; Li-qing Zhang; Jie Feng
Journal:  J Bacteriol       Date:  2011-06-17       Impact factor: 3.490

6.  Identification of open reading frames unique to a select agent: Ralstonia solanacearum race 3 biovar 2.

Authors:  Dean W Gabriel; Caitilyn Allen; Mark Schell; Timothy P Denny; Jean T Greenberg; Yong Ping Duan; Zomary Flores-Cruz; Qi Huang; Jennifer M Clifford; Gernot Presting; Enid T González; Joseph Reddy; John Elphinstone; Jill Swanson; Jian Yao; Vincent Mulholland; Li Liu; William Farmerie; Manjeera Patnaikuni; Botond Balogh; David Norman; Anne Alvarez; Jose A Castillo; Jeffrey Jones; Gerry Saddler; Theresa Walunas; Aleksey Zhukov; Natalia Mikhailova
Journal:  Mol Plant Microbe Interact       Date:  2006-01       Impact factor: 4.171

7.  The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.

Authors:  Peter Schattner; Angela N Brooks; Todd M Lowe
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  Rfam: annotating non-coding RNAs in complete genomes.

Authors:  Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

9.  Reordering contigs of draft genomes using the Mauve aligner.

Authors:  Anna I Rissman; Bob Mau; Bryan S Biehl; Aaron E Darling; Jeremy D Glasner; Nicole T Perna
Journal:  Bioinformatics       Date:  2009-06-10       Impact factor: 6.937

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  20 in total

1.  New Multilocus Variable-Number Tandem-Repeat Analysis (MLVA) Scheme for Fine-Scale Monitoring and Microevolution-Related Study of Ralstonia pseudosolanacearum Phylotype I Populations.

Authors:  Jérémy Guinard; Anne Latreille; Fabien Guérin; Stéphane Poussier; Emmanuel Wicker
Journal:  Appl Environ Microbiol       Date:  2017-02-15       Impact factor: 4.792

2.  Insights into the diversity of φRSM phages infecting strains of the phytopathogen Ralstonia solanacearum complex: regulation and evolution.

Authors:  Ahmed Askora; Takeru Kawasaki; Makoto Fujie; Takashi Yamada
Journal:  Mol Genet Genomics       Date:  2014-03-12       Impact factor: 3.291

3.  Synthesis and antimicrobial evaluation of novel 1,2,4-triazole thioether derivatives bearing a quinazoline moiety.

Authors:  Zhijiang Fan; Jun Shi; Xiaoping Bao
Journal:  Mol Divers       Date:  2018-03-24       Impact factor: 2.943

4.  Hydroxycinnamic Acid Degradation, a Broadly Conserved Trait, Protects Ralstonia solanacearum from Chemical Plant Defenses and Contributes to Root Colonization and Virulence.

Authors:  Tiffany M Lowe; Florent Ailloud; Caitilyn Allen
Journal:  Mol Plant Microbe Interact       Date:  2015-03       Impact factor: 4.171

5.  A Fast and Easy Method to Study Ralstonia solanacearum Virulence upon Transient Gene Expression or Gene Silencing in Nicotiana benthamiana Leaves.

Authors:  Wenjia Yu; Alberto P Macho
Journal:  Bio Protoc       Date:  2021-08-05

6.  Complete genome sequence of the sesame pathogen Ralstonia solanacearum strain SEPPX 05.

Authors:  Xinshen Li; Xiaomei Huang; Gongyou Chen; Lifang Zou; Lingen Wei; Juling Hua
Journal:  Genes Genomics       Date:  2018-02-08       Impact factor: 1.839

7.  Synthesis and antibacterial activity against ralstonia solanacearum for novel hydrazone derivatives containing a pyridine moiety.

Authors:  Jian Wu; Shenghong Kang; Baoan Song; Deyu Hu; Ming He; Linhong Jin; Song Yang
Journal:  Chem Cent J       Date:  2012-04-07       Impact factor: 4.215

8.  Genome Sequencing of Ralstonia solanacearum FQY_4, Isolated from a Bacterial Wilt Nursery Used for Breeding Crop Resistance.

Authors:  Yi Cao; Baoyu Tian; Yanxia Liu; Liuti Cai; Hancheng Wang; Ning Lu; Maosheng Wang; Shenghua Shang; Zhengyou Luo; Junxiong Shi
Journal:  Genome Announc       Date:  2013-05-09

9.  Ralstonia solanacearum RSp0194 Encodes a Novel 3-Keto-Acyl Carrier Protein Synthase III.

Authors:  Ya-Hui Mao; Jin-Cheng Ma; Feng Li; Zhe Hu; Hai-Hong Wang
Journal:  PLoS One       Date:  2015-08-25       Impact factor: 3.240

10.  Genome Sequencing of Ralstonia solanacearum Biovar 3, Phylotype I, Strains Rs-09-161 and Rs-10-244, Isolated from Eggplant and Chili in India.

Authors:  Raman Ramesh; Sapna Gaitonde; Gauri Achari; Trupti Asolkar; Narendra Pratap Singh; Sebastien Carrere; Stephane Genin; Nemo Peeters
Journal:  Genome Announc       Date:  2014-05-29
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