Literature DB >> 21994921

Complete genome sequence of Haloarcula hispanica, a Model Haloarchaeon for studying genetics, metabolism, and virus-host interaction.

Hailong Liu1, Zhenfang Wu, Ming Li, Fan Zhang, Huajun Zheng, Jing Han, Jingfang Liu, Jian Zhou, Shengyue Wang, Hua Xiang.   

Abstract

Haloarcula hispanica is an extremely halophilic archaeon that has an unusually low restriction barrier and is therefore significant for studying archaeal genetics, metabolism, and virus-host interactions. Here we report the complete genome sequence (3,890,005 bp) of H. hispanica strain CGMCC 1.2049, consisting of two chromosomes and one megaplasmid.

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Year:  2011        PMID： 21994921      PMCID： PMC3194904          DOI： 10.1128/JB.05953-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project.

Authors:  H Tettelin; D Radune; S Kasif; H Khouri; S L Salzberg
Journal:  Genomics       Date:  1999-12-15       Impact factor: 5.736

2.  ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes.

Authors:  Feng-Biao Guo; Hong-Yu Ou; Chun-Ting Zhang
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

3.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

Review 5.  Virus-host interactions in salt lakes.

Authors:  Kate Porter; Brendan E Russ; Michael L Dyall-Smith
Journal:  Curr Opin Microbiol       Date:  2007-08-21       Impact factor: 7.934

6.  Development of pyrF-based gene knockout systems for genome-wide manipulation of the archaea Haloferax mediterranei and Haloarcula hispanica.

Authors:  Hailong Liu; Jing Han; Xiaoqing Liu; Jian Zhou; Hua Xiang
Journal:  J Genet Genomics       Date:  2011-05-17       Impact factor: 4.275

Review 7.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

8.  Transformation methods for halophilic archaebacteria.

Authors:  S W Cline; W L Lam; R L Charlebois; L C Schalkwyk; W F Doolittle
Journal:  Can J Microbiol       Date:  1989-01       Impact factor: 2.419

9.  Transformation of members of the genus Haloarcula with shuttle vectors based on Halobacterium halobium and Haloferax volcanii plasmid replicons.

Authors:  S W Cline; W F Doolittle
Journal:  J Bacteriol       Date:  1992-02       Impact factor: 3.490

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  16 in total

1.  The methylaspartate cycle in haloarchaea and its possible role in carbon metabolism.

Authors:  Farshad Borjian; Jing Han; Jing Hou; Hua Xiang; Ivan A Berg
Journal:  ISME J       Date:  2015-08-04       Impact factor: 10.302

2.  Diversity and evolution of multiple orc/cdc6-adjacent replication origins in haloarchaea.

Authors:  Zhenfang Wu; Hailong Liu; Jingfang Liu; Xiaoqing Liu; Hua Xiang
Journal:  BMC Genomics       Date:  2012-09-14       Impact factor: 3.969

3.  A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes.

Authors:  Friedhelm Pfeiffer; Dieter Oesterhelt
Journal:  Life (Basel)       Date:  2015-06-02

4.  Coexistence of bacterial leucyl-tRNA synthetases with archaeal tRNA binding domains that distinguish tRNA(Leu) in the archaeal mode.

Authors:  Zhi-Peng Fang; Meng Wang; Zhi-Rong Ruan; Min Tan; Ru-Juan Liu; Mi Zhou; Xiao-Long Zhou; En-Duo Wang
Journal:  Nucleic Acids Res       Date:  2014-02-05       Impact factor: 16.971

5.  An Acidic Exopolysaccharide from Haloarcula hispanica ATCC33960 and Two Genes Responsible for Its Synthesis.

Authors:  Yang Lü; Hua Lu; Shiwei Wang; Jing Han; Hua Xiang; Cheng Jin
Journal:  Archaea       Date:  2017-05-28       Impact factor: 3.273

6.  The complete genome sequence of Natrinema sp. J7-2, a haloarchaeon capable of growth on synthetic media without amino acid supplements.

Authors:  Jie Feng; Bin Liu; Ziqian Zhang; Yan Ren; Yang Li; Fei Gan; Yuping Huang; Xiangdong Chen; Ping Shen; Lei Wang; Bing Tang; Xiao-Feng Tang
Journal:  PLoS One       Date:  2012-07-23       Impact factor: 3.240

7.  Association between the dynamics of multiple replication origins and the evolution of multireplicon genome architecture in haloarchaea.

Authors:  Zhenfang Wu; Haibo Yang; Jingfang Liu; Lei Wang; Hua Xiang
Journal:  Genome Biol Evol       Date:  2014-10-03       Impact factor: 3.416

8.  Multiple replication origins with diverse control mechanisms in Haloarcula hispanica.

Authors:  Zhenfang Wu; Jingfang Liu; Haibo Yang; Hailong Liu; Hua Xiang
Journal:  Nucleic Acids Res       Date:  2013-11-22       Impact factor: 16.971

9.  Complete Genome Sequence of the Extremely Halophilic Archaeon Haloarcula hispanica Strain N601.

Authors:  Jiun-Yan Ding; Pei-Wen Chiang; Mei-Jhu Hong; Mike Dyall-Smith; Sen-Lin Tang
Journal:  Genome Announc       Date:  2014-03-13

10.  Recognition of Protein-coding Genes Based on Z-curve Algorithms.

Authors:  Feng -Biao Guo; Yan Lin; Ling -Ling Chen
Journal:  Curr Genomics       Date:  2014-04       Impact factor: 2.236
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