Literature DB >> 21988889

Automated area calculation of histopathologic features using SIVQ.

Jason Hipp1, Jerome Cheng, Stephanie Daignault, Jefferey Sica, Michael C Dugan, David Lucas, Yukako Yagi, Stephen Hewitt, Ulysses J Balis.   

Abstract

Recently, with the advent of the 7th edition of the AJCC Cancer Staging manual, at least one set of criteria (e.g. breast) were modified to now require the measurement of maximal depth of stromal invasion. With the current manual interpretive morphological approaches typically employed by surgical pathologists to assess tumor extent, the specialty now potentially has stumbled upon a crossroads of practice, where the diagnostic criteria have exceeded the capabilities of our commonly available tools. While whole slide imaging (WSI) technology holds the potential to offer many improvements in clinical workflow over conventional slide microscopy including unambiguous utility for facilitating quantitative diagnostic tasks with one important example being the determination of both linear dimension and surface area. However, the availability of histology data in digital form is of little utility if time-consuming and cumbersome manual workflow steps are necessarily imposed upon the pathologist in order to generate such measurements, especially as encountered with the complex and ill-defined shapes inherent to infiltrative tumors. In this communication, we demonstrate the utility of the recently described SIVQ algorithm to serve as the basis of a highly accurate, precise and semi-automated tool for direct surface area measurement of tumor infiltration from WSI data sets. By anticipating the current trend in cancer staging that emphasizes increasingly precise feature characterization, as witnessed by the recent publication of AJCC's 7th edition of the Cancer Staging Manual, this tool holds promise to will be of value to pathologists for clinical utility.

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Year:  2011        PMID: 21988889      PMCID: PMC4605765          DOI: 10.3233/ACP-2011-0025

Source DB:  PubMed          Journal:  Anal Cell Pathol (Amst)        ISSN: 2210-7177            Impact factor:   2.916


  6 in total

1.  SIVQ-LCM protocol for the ArcturusXT instrument.

Authors:  Jason D Hipp; Jerome Cheng; Jeffrey C Hanson; Avi Z Rosenberg; Michael R Emmert-Buck; Michael A Tangrea; Ulysses J Balis
Journal:  J Vis Exp       Date:  2014-07-23       Impact factor: 1.355

2.  Induction of Pulmonary Granuloma Formation by Propionibacterium acnes Is Regulated by MyD88 and Nox2.

Authors:  Jessica L Werner; Sylvia G Escolero; Jeff T Hewlett; Tim N Mak; Brian P Williams; Yoshinobu Eishi; Gabriel Núñez
Journal:  Am J Respir Cell Mol Biol       Date:  2017-01       Impact factor: 6.914

3.  Tryggo: Old norse for truth: The real truth about ground truth: New insights into the challenges of generating ground truth maps for WSI CAD algorithm evaluation.

Authors:  Jason D Hipp; Steven C Smith; Jeffrey Sica; David Lucas; Jennifer A Hipp; Lakshmi P Kunju; Ulysses J Balis
Journal:  J Pathol Inform       Date:  2012-03-16

4.  Image microarrays derived from tissue microarrays (IMA-TMA): New resource for computer-aided diagnostic algorithm development.

Authors:  Jennifer A Hipp; Jason D Hipp; Megan Lim; Gaurav Sharma; Lauren B Smith; Stephen M Hewitt; Ulysses G J Balis
Journal:  J Pathol Inform       Date:  2012-07-12

5.  Computer-assisted measurement of primary tumor area is prognostic of recurrence-free survival in stage IB melanoma patients.

Authors:  Brooke E Rosenbaum; Christine N Schafer; Sung Won Han; Iman Osman; Hua Zhong; Nooshin Brinster
Journal:  Mod Pathol       Date:  2017-07-21       Impact factor: 7.842

6.  Computer-Aided Laser Dissection: A Microdissection Workflow Leveraging Image Analysis Tools.

Authors:  Jason D Hipp; Donald J Johann; Yun Chen; Anant Madabhushi; James Monaco; Jerome Cheng; Jaime Rodriguez-Canales; Martin C Stumpe; Greg Riedlinger; Avi Z Rosenberg; Jeffrey C Hanson; Lakshmi P Kunju; Michael R Emmert-Buck; Ulysses J Balis; Michael A Tangrea
Journal:  J Pathol Inform       Date:  2018-12-11
  6 in total

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