Literature DB >> 21987108

High contrast images of uterine tissue derived using Raman microspectroscopy with the empty modelling approach of multivariate curve resolution-alternating least squares.

Imran I Patel1, Júlio Trevisan, Geraint Evans, Valon Llabjani, Pierre L Martin-Hirsch, Helen F Stringfellow, Francis L Martin.   

Abstract

Approaches that allow one to rapidly understand tissue structure and functionality in situ remain to be developed. Such techniques are required in many instances, including where there is a need to remove with a high degree of confidence positive tumour margins during surgical excision. As biological tissue has little contrast, gold standard confirmation of surgical margins is conventionally undertaken by histopathological diagnosis of tissue architecture via optical microscopy. Vibrational spectroscopy techniques, when coupled to sophisticated computational analyses, are capable of constructing bio-molecular contrast images of unstained tissue. To assess the relative applicability of a range of candidate algorithms to distinguish the in situ bio-molecular structures of a complex tissue, the empty modelling approach of multivariate curve resolution-alternating least squares (MCR-ALS) was compared to hierarchical cluster analysis (HCA) or principal component analysis (PCA). Such chemometric analyses were applied to Raman images of benign (tumour-adjacent) endometrium, stage I and stage II endometrioid cancer. Re-constructed images from the in situ bio-molecular tissue architectures highlighted features associated with glandular epithelium, stroma, glandular lumen and myometrium. Of the tested chemometric analyses, MCR-ALS provided the best bio-molecular contrast images, superior to those derived following HCA or PCA, with clear and defined margins of histological features. Iteratively-resolved spectra identified wavenumbers responsible for the contrast image. Wavenumbers 1234 cm(-1) (Amide III), 1390 cm(-1) (CH(3) bend), 1675 cm(-1) (Amide I/lipid), 1275 cm(-1) (Amide III), 918 cm(-1) (proline) and 936 cm(-1) (proline, valine and proteins) were responsible for generating the majority of the contrast within MCR-ALS-generated images. Applications of sophisticated computational analyses coupled with vibrational spectroscopy techniques have the potential to lend novel functionality insights into bio-molecular structures in vivo.

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Year:  2011        PMID: 21987108     DOI: 10.1039/c1an15717e

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  11 in total

1.  Fourier transform infrared microspectroscopy for the analysis of the biochemical composition of C. elegans worms.

Authors:  Ming Sheng; András Gorzsás; Simon Tuck
Journal:  Worm       Date:  2016-02-18

2.  Using Raman spectroscopy to characterize biological materials.

Authors:  Holly J Butler; Lorna Ashton; Benjamin Bird; Gianfelice Cinque; Kelly Curtis; Jennifer Dorney; Karen Esmonde-White; Nigel J Fullwood; Benjamin Gardner; Pierre L Martin-Hirsch; Michael J Walsh; Martin R McAinsh; Nicholas Stone; Francis L Martin
Journal:  Nat Protoc       Date:  2016-03-10       Impact factor: 13.491

Review 3.  Vibrational Biospectroscopy: An Alternative Approach to Endometrial Cancer Diagnosis and Screening.

Authors:  Roberta Schiemer; David Furniss; Sendy Phang; Angela B Seddon; William Atiomo; Ketankumar B Gajjar
Journal:  Int J Mol Sci       Date:  2022-04-27       Impact factor: 6.208

4.  Pushing back the limits of Raman imaging by coupling super-resolution and chemometrics for aerosols characterization.

Authors:  Marc Offroy; Myriam Moreau; Sophie Sobanska; Peyman Milanfar; Ludovic Duponchel
Journal:  Sci Rep       Date:  2015-07-23       Impact factor: 4.379

5.  Diet-sourced carbon-based nanoparticles induce lipid alterations in tissues of zebrafish (Danio rerio) with genomic hypermethylation changes in brain.

Authors:  Eva Gorrochategui; Junyi Li; Nigel J Fullwood; Guang-Guo Ying; Meiping Tian; Li Cui; Heqing Shen; Sílvia Lacorte; Romà Tauler; Francis L Martin
Journal:  Mutagenesis       Date:  2016-10-26       Impact factor: 3.000

6.  Raman spectroscopy as a non-invasive diagnostic technique for endometriosis.

Authors:  Ugur Parlatan; Medine Tuna Inanc; Bahar Yuksel Ozgor; Engin Oral; Ercan Bastu; Mehmet Burcin Unlu; Gunay Basar
Journal:  Sci Rep       Date:  2019-12-24       Impact factor: 4.379

7.  Spectroscopic evaluation of carcinogenesis in endometrial cancer.

Authors:  Joanna Depciuch; Edyta Barnaś; Joanna Skręt-Magierło; Andrzej Skręt; Ewa Kaznowska; Kornelia Łach; Paweł Jakubczyk; Jozef Cebulski
Journal:  Sci Rep       Date:  2021-04-27       Impact factor: 4.379

8.  Low-dose carbon-based nanoparticle-induced effects in A549 lung cells determined by biospectroscopy are associated with increases in genomic methylation.

Authors:  Junyi Li; Meiping Tian; Li Cui; John Dwyer; Nigel J Fullwood; Heqing Shen; Francis L Martin
Journal:  Sci Rep       Date:  2016-02-02       Impact factor: 4.379

9.  Novel strategies of Raman imaging for brain tumor research.

Authors:  Imiela Anna; Polis Bartosz; Polis Lech; Abramczyk Halina
Journal:  Oncotarget       Date:  2017-07-28

Review 10.  Vibrational Spectroscopy Saliva Profiling as Biometric Tool for Disease Diagnostics: A Systematic Literature.

Authors:  Stéphane Derruau; Julien Robinet; Valérie Untereiner; Olivier Piot; Ganesh D Sockalingum; Sandrine Lorimier
Journal:  Molecules       Date:  2020-09-10       Impact factor: 4.411

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