Literature DB >> 21980559

Alternative splicing adds a new loop to the circadian clock.

Ezequiel Petrillo1, Sabrina E Sanchez2, Alberto R Kornblihtt1, Marcelo J Yanovsky2.   

Abstract

Circadian clocks allow organisms to adjust multiple physiological and developmental processes in anticipation of daily and seasonal changes in the environment. At the molecular level these clocks consist of interlocked feedback loops, involving transcriptional activation and repression, but also post-translational modifications. In a recently published work we provided evidence that PRMT5, a protein arginine methyl transferase, is part of a novel loop within the circadian clock of the plant Arabidopsis thaliana by regulating alternative splicing of key clock mRNAs. We also found evidence indicating that PRMT5 has a role in the regulation of alternative splicing and the circadian network in Drosophila melanogaster, although the clock connection in the latter is more elusive and seems to be at the output level. We conclude that alternative precursor messenger RNA (premRNA) splicing is part of the circadian program and could be a main actor in the fine-tuning of biological clocks. Here, we embrace the alternative splicing process as part of the circadian program and discuss the possibility that this mechanism is of fundamental relevance for the fine-tuning of biological clocks.

Entities:  

Keywords:  Arabidopsis thaliana; Drosophila melanogaster; PRMT5; alternative splicing; arginine methyltransferase; circadian clock; epigenetic; transcriptional regulation

Year:  2011        PMID: 21980559      PMCID: PMC3187887          DOI: 10.4161/cib.4.3.14777

Source DB:  PubMed          Journal:  Commun Integr Biol        ISSN: 1942-0889


  23 in total

Review 1.  Pre-mRNA splicing and human disease.

Authors:  Nuno André Faustino; Thomas A Cooper
Journal:  Genes Dev       Date:  2003-02-15       Impact factor: 11.361

2.  Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock.

Authors:  Eva M Farré; Stacey L Harmer; Frank G Harmon; Marcelo J Yanovsky; Steve A Kay
Journal:  Curr Biol       Date:  2005-01-11       Impact factor: 10.834

3.  Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana.

Authors:  Sunghyun Hong; Hae-Ryong Song; Kerry Lutz; Randall A Kerstetter; Todd P Michael; C Robertson McClung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-19       Impact factor: 11.205

4.  Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts.

Authors:  Craig G Simpson; John Fuller; Monika Maronova; Maria Kalyna; Diane Davidson; Jim McNicol; Andrea Barta; John W S Brown
Journal:  Plant J       Date:  2007-12-15       Impact factor: 6.417

5.  Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling.

Authors:  Hoo Sun Chung; Thomas F Cooke; Cody L Depew; Lalita C Patel; Narihito Ogawa; Yuichi Kobayashi; Gregg A Howe
Journal:  Plant J       Date:  2010-08       Impact factor: 6.417

Review 6.  Arginine methylation an emerging regulator of protein function.

Authors:  Mark T Bedford; Stéphane Richard
Journal:  Mol Cell       Date:  2005-04-29       Impact factor: 17.970

Review 7.  Network news: prime time for systems biology of the plant circadian clock.

Authors:  C Robertson McClung; Rodrigo A Gutiérrez
Journal:  Curr Opin Genet Dev       Date:  2010-12       Impact factor: 5.578

8.  Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing.

Authors:  Xian Deng; Lianfeng Gu; Chunyan Liu; Tiancong Lu; Falong Lu; Zhike Lu; Peng Cui; Yanxi Pei; Baichen Wang; Songnian Hu; Xiaofeng Cao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-18       Impact factor: 11.205

9.  Genome-wide mapping of alternative splicing in Arabidopsis thaliana.

Authors:  Sergei A Filichkin; Henry D Priest; Scott A Givan; Rongkun Shen; Douglas W Bryant; Samuel E Fox; Weng-Keen Wong; Todd C Mockler
Journal:  Genome Res       Date:  2009-10-26       Impact factor: 9.043

10.  SKB1-mediated symmetric dimethylation of histone H4R3 controls flowering time in Arabidopsis.

Authors:  Xin Wang; Ya Zhang; Qibin Ma; Zhaoliang Zhang; Yongbiao Xue; Shilai Bao; Kang Chong
Journal:  EMBO J       Date:  2007-03-15       Impact factor: 11.598

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  16 in total

Review 1.  Cardinal Epigenetic Role of non-coding Regulatory RNAs in Circadian Rhythm.

Authors:  Utpal Bhadra; Pradipta Patra; Manika Pal-Bhadra
Journal:  Mol Neurobiol       Date:  2017-05-17       Impact factor: 5.590

2.  Thermosensitive alternative splicing senses and mediates temperature adaptation in Drosophila.

Authors:  Ane Martin Anduaga; Naveh Evantal; Ines Lucia Patop; Osnat Bartok; Ron Weiss; Sebastian Kadener
Journal:  Elife       Date:  2019-11-08       Impact factor: 8.140

3.  Rhythmic Behavior Is Controlled by the SRm160 Splicing Factor in Drosophila melanogaster.

Authors:  Esteban J Beckwith; Carlos E Hernando; Sofía Polcowñuk; Agustina P Bertolin; Estefania Mancini; M Fernanda Ceriani; Marcelo J Yanovsky
Journal:  Genetics       Date:  2017-08-11       Impact factor: 4.562

4.  A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis.

Authors:  Pil Joon Seo; Mi-Jeong Park; Mi-Hye Lim; Sang-Gyu Kim; Minyoung Lee; Ian T Baldwin; Chung-Mo Park
Journal:  Plant Cell       Date:  2012-06-19       Impact factor: 11.277

Review 5.  Adaptation of molecular circadian clockwork to environmental changes: a role for alternative splicing and miRNAs.

Authors:  Osnat Bartok; Charalambos P Kyriacou; Joel Levine; Amita Sehgal; Sebastian Kadener
Journal:  Proc Biol Sci       Date:  2013-07-03       Impact factor: 5.349

6.  Diurnal rhythms in neurexins transcripts and inhibitory/excitatory synapse scaffold proteins in the biological clock.

Authors:  Mika Shapiro-Reznik; Anje Jilg; Hadas Lerner; David J Earnest; Nava Zisapel
Journal:  PLoS One       Date:  2012-05-25       Impact factor: 3.240

7.  Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.

Authors:  Yamile Marquez; John W S Brown; Craig Simpson; Andrea Barta; Maria Kalyna
Journal:  Genome Res       Date:  2012-03-05       Impact factor: 9.043

Review 8.  Circadian clock and photoperiodic response in Arabidopsis: from seasonal flowering to redox homeostasis.

Authors:  Jae Sung Shim; Takato Imaizumi
Journal:  Biochemistry       Date:  2014-12-30       Impact factor: 3.162

9.  The regulatory role of Pcf11-similar-4 (PCFS4) in Arabidopsis development by genome-wide physical interactions with target loci.

Authors:  Denghui Xing; Yajun Wang; Ruqiang Xu; Xinfu Ye; Dewei Yang; Qingshun Q Li
Journal:  BMC Genomics       Date:  2013-09-03       Impact factor: 3.969

Review 10.  Alternative splicing in plants--coming of age.

Authors:  Naeem H Syed; Maria Kalyna; Yamile Marquez; Andrea Barta; John W S Brown
Journal:  Trends Plant Sci       Date:  2012-06-27       Impact factor: 18.313

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