Literature DB >> 21966566

What are the origins and phylogeny of plant hemoglobins?

Serge N Vinogradov1, David Hoogewijs, Raúl Arredondo-Peter.   

Abstract

Land plants and algae are now represented by about 40 genomes. Although most are incomplete, putative globins appear to be present in all the ca. 30 land plant genomes and in all except one algal genomes. The globins have either the canonical 3/3 α-helical fold characteristic of vertebrate myoglobin (Mb) or 2/2 α-helical folds, characteristic of bacterial globins with a truncated Mb-fold. In view of the fairly complete picture of the globin superfamily that is now available from analyses of over 1,000 bacterial genomes and >200 other eukaryote genomes, it is now possible to seek answers to the following twin questions: what is the phylogenetic relationship of plant and algal globins to those of other eukaryotes and what is their likely bacterial origin? We summarize below the available results. Molecular phylogenetic analyses indicate that plant and algal 3/3 globins are related to bacterial flavohemoglobins and vertebrate neuroglobins. Furthermore, they also suggest that plant and algal 3/3 and group 1 2/2 Hbs originated from the horizontal gene transfers that accompanied the two generally accepted endosymbioses of a proteobacterium and a cyanobacterium with a eukaryote ancestor. In contrast, the origin of the group 2 2/2 Hbs unexpectedly appears to involve horizontal gene transfer from a bacterium ancestral to Chloroflexi, Deinococcales, Bacillli and Actinomycetes. We present additional results which indicate that the shared ancestry is likely to be with the Chloroflexi alone.

Entities:  

Keywords:  algae; evolution; hemoglobins; horizontal gene transfer; phylogeny; plant

Year:  2011        PMID: 21966566      PMCID: PMC3181516          DOI: 10.4161/cib.4.4.15429

Source DB:  PubMed          Journal:  Commun Integr Biol        ISSN: 1942-0889


  14 in total

Review 1.  A phylum level perspective on bacterial cell envelope architecture.

Authors:  Iain C Sutcliffe
Journal:  Trends Microbiol       Date:  2010-07-14       Impact factor: 17.079

Review 2.  Globin-coupled sensors, protoglobins, and the last universal common ancestor.

Authors:  Tracey Allen K Freitas; Jennifer A Saito; Shaobin Hou; Maqsudul Alam
Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

3.  A model of globin evolution.

Authors:  Serge N Vinogradov; David Hoogewijs; Xavier Bailly; Kenji Mizuguchi; Sylvia Dewilde; Luc Moens; Jacques R Vanfleteren
Journal:  Gene       Date:  2007-05-04       Impact factor: 3.688

Review 4.  The structure and function of plant hemoglobins.

Authors:  Julie A Hoy; Mark S Hargrove
Journal:  Plant Physiol Biochem       Date:  2008-01-03       Impact factor: 4.270

5.  Three globin lineages belonging to two structural classes in genomes from the three kingdoms of life.

Authors:  Serge N Vinogradov; David Hoogewijs; Xavier Bailly; Raúl Arredondo-Peter; Michel Guertin; Julian Gough; Sylvia Dewilde; Luc Moens; Jacques R Vanfleteren
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-01       Impact factor: 11.205

6.  Neuroglobin and cytoglobin: genes, proteins and evolution.

Authors:  Thorsten Burmester; Mark Haberkamp; Stephanie Mitz; Anja Roesner; Marc Schmidt; Bettina Ebner; Frank Gerlach; Christine Fuchs; Thomas Hankeln
Journal:  IUBMB Life       Date:  2004 Nov-Dec       Impact factor: 3.885

7.  Review: correlations between oxygen affinity and sequence classifications of plant hemoglobins.

Authors:  Benoit J Smagghe; Julie A Hoy; Ryan Percifield; Suman Kundu; Mark S Hargrove; Gautam Sarath; Jean-Louis Hilbert; Richard A Watts; Elizabeth S Dennis; W James Peacock; Sylvia Dewilde; Luc Moens; George C Blouin; John S Olson; Cyril A Appleby
Journal:  Biopolymers       Date:  2009-12       Impact factor: 2.505

Review 8.  Plant hemoglobins: what we know six decades after their discovery.

Authors:  Verónica Garrocho-Villegas; Sabarinathan Kuttalingam Gopalasubramaniam; Raúl Arredondo-Peter
Journal:  Gene       Date:  2007-04-25       Impact factor: 3.688

Review 9.  Microbial globins.

Authors:  Guanghui Wu; Laura M Wainwright; Robert K Poole
Journal:  Adv Microb Physiol       Date:  2003       Impact factor: 3.517

10.  Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life.

Authors:  Ruben E Valas; Philip E Bourne
Journal:  Biol Direct       Date:  2009-08-25       Impact factor: 4.540

View more
  6 in total

1.  The cytochrome P450 genesis locus: the origin and evolution of animal cytochrome P450s.

Authors:  David R Nelson; Jared V Goldstone; John J Stegeman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-06       Impact factor: 6.237

2.  Variability of non-symbiotic and truncated hemoglobin genes from the genome of cultivated monocots.

Authors:  Gustavo Rodríguez-Alonso; Raúl Arredondo-Peter
Journal:  Commun Integr Biol       Date:  2013-12-18

Review 3.  Hemoglobin: a nitric-oxide dioxygenase.

Authors:  Paul R Gardner
Journal:  Scientifica (Cairo)       Date:  2012-12-19

Review 4.  Rice ( Oryza) hemoglobins.

Authors:  Raúl Arredondo-Peter; Jose F Moran; Gautam Sarath
Journal:  F1000Res       Date:  2014-10-27

5.  Amoebozoa possess lineage-specific globin gene repertoires gained by individual horizontal gene transfers.

Authors:  Jasmin Dröge; Dorota Buczek; Yutaka Suzuki; Wojciech Makałowski
Journal:  Int J Biol Sci       Date:  2014-06-19       Impact factor: 6.580

6.  Phytoglobin: a novel nomenclature for plant globins accepted by the globin community at the 2014 XVIII conference on Oxygen-Binding and Sensing Proteins.

Authors:  Robert Hill; Mark Hargrove; Raúl Arredondo-Peter
Journal:  F1000Res       Date:  2016-02-24
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.