Literature DB >> 21966561

Evolution of cyanobacterial morphotypes: Taxa required for improved phylogenomic approaches.

Bettina E Schirrmeister1, Maria Anisimova, Alexandre Antonelli, Homayoun C Bagheri.   

Abstract

Within prokaryotes cyanobacteria represent one of the oldest and morphologically most diverse phyla on Earth. The rise of oxygen levels in the atmosphere 2.32-2.45 billion years ago is assigned to the photosynthetic activity of ancestors from this phylum. Subsequently cyanobacteria were able to adapt to various habitats evolving a comprehensive set of different morphotypes. In a recent study we showed that this evolution is not a gradual transition from simple unicellular to more complex multicellular forms as often assumed. Instead complexity was lost several times and regained at least once. An understanding of the genetic basis of these transitions would be further strengthened by phylogenomic approaches. However, considering that new methods for phylogenomic analyses are emerging, it is unfortunate that genomes available today are comprised of an unbalanced sampling of taxa. We propose avenues to remedy this by identifying taxa that would improve the representation of phylogenetic diversity in this phylum.

Entities:  

Keywords:  Dollo's law; Great Oxygenation Event; cyanobacterial fossils; eubacterial phylogenetics; major transitions; origin of life

Year:  2011        PMID: 21966561      PMCID: PMC3181511          DOI: 10.4161/cib.4.4.16183

Source DB:  PubMed          Journal:  Commun Integr Biol        ISSN: 1942-0889


  9 in total

Review 1.  Uprooting the tree of life.

Authors:  W F Doolittle
Journal:  Sci Am       Date:  2000-02       Impact factor: 2.142

2.  Dating the rise of atmospheric oxygen.

Authors:  A Bekker; H D Holland; P-L Wang; D Rumble; H J Stein; J L Hannah; L L Coetzee; N J Beukes
Journal:  Nature       Date:  2004-01-08       Impact factor: 49.962

3.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

Review 4.  Phylogenomics and the reconstruction of the tree of life.

Authors:  Frédéric Delsuc; Henner Brinkmann; Hervé Philippe
Journal:  Nat Rev Genet       Date:  2005-05       Impact factor: 53.242

5.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

6.  AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics.

Authors:  Johan A A Nylander; James C Wilgenbusch; Dan L Warren; David L Swofford
Journal:  Bioinformatics       Date:  2007-08-30       Impact factor: 6.937

7.  Parallel adaptations to high temperatures in the Archaean eon.

Authors:  Bastien Boussau; Samuel Blanquart; Anamaria Necsulea; Nicolas Lartillot; Manolo Gouy
Journal:  Nature       Date:  2008-11-26       Impact factor: 49.962

8.  The origin of multicellularity in cyanobacteria.

Authors:  Bettina E Schirrmeister; Alexandre Antonelli; Homayoun C Bagheri
Journal:  BMC Evol Biol       Date:  2011-02-14       Impact factor: 3.260

9.  Species choice for comparative genomics: being greedy works.

Authors:  Fabio Pardi; Nick Goldman
Journal:  PLoS Genet       Date:  2005-12-02       Impact factor: 5.917

  9 in total
  11 in total

1.  Loss of Filamentous Multicellularity in Cyanobacteria: the Extremophile Gloeocapsopsis sp. Strain UTEX B3054 Retained Multicellular Features at the Genomic and Behavioral Levels.

Authors:  Catalina Urrejola; Peter von Dassow; Ger van den Engh; Loreto Salas; Conrad W Mullineaux; Rafael Vicuña; Patricia Sánchez-Baracaldo
Journal:  J Bacteriol       Date:  2020-05-27       Impact factor: 3.490

2.  Evolution of multicellularity coincided with increased diversification of cyanobacteria and the Great Oxidation Event.

Authors:  Bettina E Schirrmeister; Jurriaan M de Vos; Alexandre Antonelli; Homayoun C Bagheri
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-14       Impact factor: 11.205

3.  Gene copy number variation and its significance in cyanobacterial phylogeny.

Authors:  Bettina E Schirrmeister; Daniel A Dalquen; Maria Anisimova; Homayoun C Bagheri
Journal:  BMC Microbiol       Date:  2012-08-15       Impact factor: 3.605

4.  Functional Basis of Microorganism Classification.

Authors:  Chengsheng Zhu; Tom O Delmont; Timothy M Vogel; Yana Bromberg
Journal:  PLoS Comput Biol       Date:  2015-08-28       Impact factor: 4.475

5.  Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils.

Authors:  Bettina E Schirrmeister; Muriel Gugger; Philip C J Donoghue
Journal:  Palaeontology       Date:  2015-06-23       Impact factor: 4.073

6.  Stabilizing multicellularity through ratcheting.

Authors:  Eric Libby; Peter L Conlin; Ben Kerr; William C Ratcliff
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-19       Impact factor: 6.237

7.  Novel Genomic and Evolutionary Perspective of Cyanobacterial tRNAs.

Authors:  Tapan K Mohanta; Asad S Syed; Fuad Ameen; Hanhong Bae
Journal:  Front Genet       Date:  2017-12-13       Impact factor: 4.599

8.  A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria).

Authors:  Luc Cornet; Annick Wilmotte; Emmanuelle J Javaux; Denis Baurain
Journal:  BMC Res Notes       Date:  2018-07-03

9.  The future of genomics in polar and alpine cyanobacteria.

Authors:  Nathan A M Chrismas; Alexandre M Anesio; Patricia Sánchez-Baracaldo
Journal:  FEMS Microbiol Ecol       Date:  2018-04-01       Impact factor: 4.194

10.  Ecogenomics and Taxonomy of Cyanobacteria Phylum.

Authors:  Juline M Walter; Felipe H Coutinho; Bas E Dutilh; Jean Swings; Fabiano L Thompson; Cristiane C Thompson
Journal:  Front Microbiol       Date:  2017-11-14       Impact factor: 5.640

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