Literature DB >> 21961527

Distinguishing amyloid fibril structures in Alzheimer's disease (AD) by two-dimensional ultraviolet (2DUV) spectroscopy.

A R Lam1, J Jiang, S Mukamel.   

Abstract

Understanding the aggregation mechanism of amyloid fibrils and characterizing their structures are important steps in the investigation of several neurodegenerative disorders associated with the misfolding of proteins. We report a simulation study of coherent two-dimensional chiral signals of three NMR structures of Aβ protein fibrils associated with Alzheimer's Disease, two models for Aβ(8-40) peptide wild-type (WT) and one for the Iowa (D23N) Aβ(15-40) mutant. Both far-ultraviolet (FUV) signals (λ = 190-250 nm), which originate from the backbone nπ* and ππ* transitions, and near-ultraviolet (NUV) signals (λ ≥ 250 nm) associated with aromatic side chains (Phe and Tyr) show distinct cross-peak patterns that can serve as novel signatures for the secondary structure.

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Year:  2011        PMID: 21961527      PMCID: PMC3458647          DOI: 10.1021/bi201317c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  37 in total

1.  Two-dimensional ultraviolet (2DUV) spectroscopic tools for identifying fibrillation propensity of protein residue sequences.

Authors:  Jun Jiang; Shaul Mukamel
Journal:  Angew Chem Int Ed Engl       Date:  2010-12-10       Impact factor: 15.336

2.  In silico study of amyloid beta-protein folding and oligomerization.

Authors:  B Urbanc; L Cruz; S Yun; S V Buldyrev; G Bitan; D B Teplow; H E Stanley
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-06       Impact factor: 11.205

3.  Dissecting coherent vibrational spectra of small proteins into secondary structural elements by sensitivity analysis.

Authors:  Wei Zhuang; Darius Abramavicius; Shaul Mukamel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-13       Impact factor: 11.205

4.  On the nucleation of amyloid beta-protein monomer folding.

Authors:  Noel D Lazo; Marianne A Grant; Margaret C Condron; Alan C Rigby; David B Teplow
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

Review 5.  Circular and linear dichroism of proteins.

Authors:  Benjamin M Bulheller; Alison Rodger; Jonathan D Hirst
Journal:  Phys Chem Chem Phys       Date:  2007-02-20       Impact factor: 3.676

Review 6.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

7.  Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution.

Authors:  Sang-Hee Shim; Ruchi Gupta; Yun L Ling; David B Strasfeld; Daniel P Raleigh; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-03       Impact factor: 11.205

8.  Two-dimensional near-ultraviolet spectroscopy of aromatic residues in amyloid fibrils: a first principles study.

Authors:  Jun Jiang; Shaul Mukamel
Journal:  Phys Chem Chem Phys       Date:  2010-12-06       Impact factor: 3.676

9.  Amyloid beta-protein fibrillogenesis. Detection of a protofibrillar intermediate.

Authors:  D M Walsh; A Lomakin; G B Benedek; M M Condron; D B Teplow
Journal:  J Biol Chem       Date:  1997-08-29       Impact factor: 5.157

Review 10.  The amyloid hypothesis of Alzheimer's disease: progress and problems on the road to therapeutics.

Authors:  John Hardy; Dennis J Selkoe
Journal:  Science       Date:  2002-07-19       Impact factor: 47.728

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  3 in total

1.  Monitoring the folding of Trp-cage peptide by two-dimensional infrared (2DIR) spectroscopy.

Authors:  Zaizhi Lai; Nicholas K Preketes; Shaul Mukamel; Jin Wang
Journal:  J Phys Chem B       Date:  2013-04-05       Impact factor: 2.991

2.  Tracking the mechanism of fibril assembly by simulated two-dimensional ultraviolet spectroscopy.

Authors:  A R Lam; J J Rodriguez; A Rojas; H A Scheraga; S Mukamel
Journal:  J Phys Chem A       Date:  2013-01-07       Impact factor: 2.781

3.  Study of the γD-crystallin protein using two-dimensional infrared (2DIR) spectroscopy: experiment and simulation.

Authors:  A R Lam; S D Moran; N K Preketes; T O Zhang; M T Zanni; S Mukamel
Journal:  J Phys Chem B       Date:  2013-09-18       Impact factor: 2.991

  3 in total

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