Literature DB >> 21957054

Structure of transfer RNAs: similarity and variability.

Richard Giegé1, Frank Jühling, Joern Pütz, Peter Stadler, Claude Sauter, Catherine Florentz.   

Abstract

Transfer RNAs (tRNAs) are ancient molecules whose origin goes back to the beginning of life on Earth. Key partners in the ribosome-translation machinery, tRNAs read genetic information on messenger RNA and deliver codon specified amino acids attached to their distal 3'-extremity for peptide bond synthesis on the ribosome. In addition to this universal function, tRNAs participate in a wealth of other biological processes and undergo intricate maturation events. Our understanding of tRNA biology has been mainly phenomenological, but ongoing progress in structural biology is giving a robust physico-chemical basis that explains many facets of tRNA functions. Advanced sequence analysis of tRNA genes and their RNA transcripts have uncovered rules that underly tRNA 2D folding and 3D L-shaped architecture, as well as provided clues about their evolution. The increasing number of X-ray structures of free, protein- and ribosome-bound tRNA, reveal structural details accounting for the identity of the 22 tRNA families (one for each proteinogenic amino acid) and for the multifunctionality of a given family. Importantly, the structural role of post-transcriptional tRNA modifications is being deciphered. On the other hand, the plasticity of tRNA structure during function has been illustrated using a variety of technical approaches that allow dynamical insights. The large range of structural properties not only allows tRNAs to be the key actors of translation, but also sustain a diversity of unrelated functions from which only a few have already been pinpointed. Many surprises can still be expected.
Copyright © 2011 John Wiley & Sons, Ltd.

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Year:  2011        PMID: 21957054     DOI: 10.1002/wrna.103

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  66 in total

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Authors:  Clément Dégut; Martine Roovers; Pierre Barraud; Franck Brachet; André Feller; Valéry Larue; Abdalla Al Refaii; Joël Caillet; Louis Droogmans; Carine Tisné
Journal:  Nucleic Acids Res       Date:  2019-05-21       Impact factor: 16.971

2.  tRNA acceptor stem and anticodon bases form independent codes related to protein folding.

Authors:  Charles W Carter; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-01       Impact factor: 11.205

3.  Mechanistic Studies Reveal Similar Catalytic Strategies for Phosphodiester Bond Hydrolysis by Protein-only and RNA-dependent Ribonuclease P.

Authors:  Michael J Howard; Bradley P Klemm; Carol A Fierke
Journal:  J Biol Chem       Date:  2015-03-27       Impact factor: 5.157

Review 4.  Introduction to protein crystallization.

Authors:  Alexander McPherson; Jose A Gavira
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

5.  Identifying the ligated amino acid of archaeal tRNAs based on positions outside the anticodon.

Authors:  Tal Galili; Hila Gingold; Shaul Shaul; Yoav Benjamini
Journal:  RNA       Date:  2016-08-11       Impact factor: 4.942

6.  Repairing tRNA termini: News from the 3' end.

Authors:  Christiane Rammelt; Walter Rossmanith
Journal:  RNA Biol       Date:  2016-09-23       Impact factor: 4.652

Review 7.  New molecular engineering approaches for crystallographic studies of large RNAs.

Authors:  Jinwei Zhang; Adrian R Ferré-D'Amaré
Journal:  Curr Opin Struct Biol       Date:  2014-03-06       Impact factor: 6.809

8.  A hypertension-associated mitochondrial DNA mutation alters the tertiary interaction and function of tRNALeu(UUR).

Authors:  Mi Zhou; Meng Wang; Ling Xue; Zhi Lin; Qiufen He; Wenwen Shi; Yaru Chen; Xiaofen Jin; Haiying Li; Pingping Jiang; Min-Xin Guan
Journal:  J Biol Chem       Date:  2017-07-05       Impact factor: 5.157

9.  Duplication of leucyl-tRNA synthetase in an archaeal extremophile may play a role in adaptation to variable environmental conditions.

Authors:  Christopher S Weitzel; Li Li; Changyi Zhang; Kristen K Eilts; Nicholas M Bretz; Alex L Gatten; Rachel J Whitaker; Susan A Martinis
Journal:  J Biol Chem       Date:  2020-02-26       Impact factor: 5.157

10.  Structural effects of modified ribonucleotides and magnesium in transfer RNAs.

Authors:  You Xu; Alexander D MacKerell; Lennart Nilsson
Journal:  Bioorg Med Chem       Date:  2016-06-18       Impact factor: 3.641

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