Literature DB >> 21947507

STD-NMR: application to transient interactions between biomolecules-a quantitative approach.

Jesus Angulo1, Pedro M Nieto.   

Abstract

Saturation transfer difference NMR (STD NMR) spectroscopy is one of the most powerful NMR techniques for detection and characterization of transient (fast) receptor-ligand interactions in solution. By observing the signals of a small molecule (ligand) with spectroscopic properties suitable for high-resolution studies, irrespective of receptor size, STD NMR enables quantitative structural and affinity information to be obtained about the molecular recognition process under study. Approximately one decade after its introduction, the technique has reached maturity, and is highly robust and useful. The objective of this article is to review the current status of this powerful technique, with particular emphasis on quantitative applications, within the framework of the (bio-)chemistry of molecular recognition.

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Year:  2011        PMID: 21947507     DOI: 10.1007/s00249-011-0749-5

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  49 in total

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Authors:  Silvia Mari; Diego Serrano-Gómez; F Javier Cañada; Angel L Corbí; Jesús Jiménez-Barbero
Journal:  Angew Chem Int Ed Engl       Date:  2004-12-27       Impact factor: 15.336

2.  Differential-frequency saturation transfer difference NMR spectroscopy allows the detection of different ligand-DNA binding modes.

Authors:  Simone Di Micco; Carla Bassarello; Giuseppe Bifulco; Raffaele Riccio; Luigi Gomez-Paloma
Journal:  Angew Chem Int Ed Engl       Date:  2005-12-23       Impact factor: 15.336

3.  Targeting norovirus infection-multivalent entry inhibitor design based on NMR experiments.

Authors:  Christoph Rademacher; Julie Guiard; Pavel I Kitov; Brigitte Fiege; Kevin P Dalton; Francisco Parra; David R Bundle; Thomas Peters
Journal:  Chemistry       Date:  2011-05-12       Impact factor: 5.236

4.  Group epitope mapping by saturation transfer difference NMR to identify segments of a ligand in direct contact with a protein receptor.

Authors:  M Mayer; B Meyer
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

5.  Direct observation of ligand binding to membrane proteins in living cells by a saturation transfer double difference (STDD) NMR spectroscopy method shows a significantly higher affinity of integrin alpha(IIb)beta3 in native platelets than in liposomes.

Authors:  Birgit Claasen; Marco Axmann; Robert Meinecke; Bernd Meyer
Journal:  J Am Chem Soc       Date:  2005-01-26       Impact factor: 15.419

6.  Dissection of the carbohydrate specificity of the broadly neutralizing anti-HIV-1 antibody 2G12.

Authors:  Daniel A Calarese; Hing-Ken Lee; Cheng-Yuan Huang; Michael D Best; Rena D Astronomo; Robyn L Stanfield; Hermann Katinger; Dennis R Burton; Chi-Huey Wong; Ian A Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-07       Impact factor: 11.205

7.  Mapping the binding of synthetic disaccharides representing epitopes of chlamydial lipopolysaccharide to antibodies with NMR.

Authors:  H Maaheimo; P Kosma; L Brade; H Brade; T Peters
Journal:  Biochemistry       Date:  2000-10-24       Impact factor: 3.162

8.  Direct detection of ligand binding to Sepharose-immobilised protein using saturation transfer double difference (STDD) NMR spectroscopy.

Authors:  Thomas Haselhorst; Anja K Münster-Kühnel; Melanie Oschlies; Joe Tiralongo; Rita Gerardy-Schahn; Mark von Itzstein
Journal:  Biochem Biophys Res Commun       Date:  2007-06-06       Impact factor: 3.575

9.  Lectin-based drug design: combined strategy to identify lead compounds using STD NMR spectroscopy, solid-phase assays and cell binding for a plant toxin model.

Authors:  João P Ribeiro; Sabine André; F Javier Cañada; Hans-Joachim Gabius; Anna Paola Butera; Ricardo José Alves; Jesús Jiménez-Barbero
Journal:  ChemMedChem       Date:  2010-03-01       Impact factor: 3.466

10.  The bound conformation of microtubule-stabilizing agents: NMR insights into the bioactive 3D structure of discodermolide and dictyostatin.

Authors:  Angeles Canales; Ruth Matesanz; Nicola M Gardner; José Manuel Andreu; Ian Paterson; J Fernando Díaz; Jesús Jiménez-Barbero
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

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  34 in total

1.  Extracting protein dynamics information from overlapped NMR signals using relaxation dispersion difference NMR spectroscopy.

Authors:  Tsuyoshi Konuma; Erisa Harada; Kenji Sugase
Journal:  J Biomol NMR       Date:  2015-10-17       Impact factor: 2.835

2.  Identification of the binding site of an allosteric ligand using STD-NMR, docking, and CORCEMA-ST calculations.

Authors:  Wei Zhang; Rongbao Li; Ronald Shin; Yimin Wang; Indira Padmalayam; Ling Zhai; N Rama Krishna
Journal:  ChemMedChem       Date:  2013-07-25       Impact factor: 3.466

3.  A three-stage biophysical screening cascade for fragment-based drug discovery.

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Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

4.  Evaluation of ligand-based NMR screening methods to characterize small molecule binding to HIV-1 glycoprotein-41.

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Journal:  Org Biomol Chem       Date:  2017-06-07       Impact factor: 3.876

5.  Molecular insights into the interaction of Hsp90 with allosteric inhibitors targeting the C-terminal domain.

Authors:  Vasantha Kumar Mv; Radwan Ebna Noor; Rachel E Davis; Zheng Zhang; Edvinas Sipavicius; Dimitra Keramisanou; Brian S J Blagg; Ioannis Gelis
Journal:  Medchemcomm       Date:  2018-07-02       Impact factor: 3.597

6.  The isoprenoid derivative N6 -benzyladenosine CM223 exerts antitumor effects in glioma patient-derived primary cells through the mevalonate pathway.

Authors:  Elena Ciaglia; Manuela Grimaldi; Mario Abate; Mario Scrima; Manuela Rodriquez; Chiara Laezza; Roberta Ranieri; Simona Pisanti; Pierangela Ciuffreda; Clementina Manera; Patrizia Gazzerro; Anna Maria D'Ursi; Maurizio Bifulco
Journal:  Br J Pharmacol       Date:  2017-06-11       Impact factor: 8.739

7.  A Comprehensive Study of the Interaction between Peptidoglycan Fragments and the Extracellular Domain of Mycobacterium tuberculosis Ser/Thr Kinase PknB.

Authors:  Qianqian Wang; Roberta Marchetti; Sladjana Prisic; Kentaro Ishii; Yohei Arai; Ippei Ohta; Shinsuke Inuki; Susumu Uchiyama; Alba Silipo; Antonio Molinaro; Robert N Husson; Koichi Fukase; Yukari Fujimoto
Journal:  Chembiochem       Date:  2017-09-14       Impact factor: 3.164

8.  Optimising selective excitation pulses to maximise saturation transfer difference NMR spectroscopy.

Authors:  Nathan B Ley; Michelle L Rowe; Richard A Williamson; Mark J Howard
Journal:  RSC Adv       Date:  2014-01-08       Impact factor: 3.361

9.  The binding of TIA-1 to RNA C-rich sequences is driven by its C-terminal RRM domain.

Authors:  Isabel Cruz-Gallardo; Ángeles Aroca; Menachem J Gunzburg; Andrew Sivakumaran; Je-Hyun Yoon; Jesús Angulo; Cecilia Persson; Myriam Gorospe; B Göran Karlsson; Jacqueline A Wilce; Irene Díaz-Moreno
Journal:  RNA Biol       Date:  2014-04-24       Impact factor: 4.652

10.  NMR Spin Relaxation Theory of Biomolecules Undergoing Highly Asymmetric Exchange with Large Interaction Partners.

Authors:  Gregory Jameson; Rafael Brüschweiler
Journal:  J Chem Theory Comput       Date:  2021-03-22       Impact factor: 6.006

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