Literature DB >> 21947269

Quantitative methylation analysis of HOXA3, 7, 9, and 10 genes in glioma: association with tumor WHO grade and clinical outcome.

Angela Di Vinci1, Ida Casciano, Elena Marasco, Barbara Banelli, Gian Luigi Ravetti, Luana Borzì, Claudio Brigati, Alessandra Forlani, Alessandra Dorcaratto, Giorgio Allemanni, Gianluigi Zona, Renato Spaziante, Henning Gohlke, Giovanni Gardin, Domenico Franco Merlo, Vilma Mantovani, Massimo Romani.   

Abstract

PURPOSE: The purpose of this study was to determine whether specific HOXA epigenetic signatures could differentiate glioma with distinct biological, pathological, and clinical characteristics.
METHODS: We evaluated HOXA3, 7, 9, and 10 methylation in 63 glioma samples by MassARRAY and pyrosequencing.
RESULTS: We demonstrated the direct statistical correlation between the level of methylation of all HOXA genes examined and WHO grading. Moreover, in glioblastoma patients, higher level of HOXA9 and HOXA10 methylation significantly correlated with increased survival probability (HOXA9-HR: 0.36, P = 0.007; HOXA10-HR: 0.46, P = 0.045; combined HOXA9 and 10-HR 0.28, P = 0.004).
CONCLUSIONS: This study identifies HOXA3, 7, 9, and 10 as methylation targets mainly in high-grade glioma and hypermethylation of the HOXA9 and 10 as prognostic factor in glioblastoma patients. Our data indicate that these epigenetic changes may be biomarkers of clinically different subgroups of glioma patients that could eventually benefit from personalized therapeutic strategies.

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Year:  2011        PMID: 21947269     DOI: 10.1007/s00432-011-1070-5

Source DB:  PubMed          Journal:  J Cancer Res Clin Oncol        ISSN: 0171-5216            Impact factor:   4.553


  38 in total

Review 1.  Molecular epigenetics and genetics in neuro-oncology.

Authors:  Raman P Nagarajan; Joseph F Costello
Journal:  Neurotherapeutics       Date:  2009-07       Impact factor: 7.620

2.  HOX gene clusters are hotspots of de novo methylation in CpG islands of human lung adenocarcinomas.

Authors:  Masahiko Shiraishi; Azumi Sekiguchi; Adam J Oates; Michael J Terry; Yuji Miyamoto
Journal:  Oncogene       Date:  2002-05-16       Impact factor: 9.867

Review 3.  MGMT promoter methylation in malignant gliomas: ready for personalized medicine?

Authors:  Michael Weller; Roger Stupp; Guido Reifenberger; Alba A Brandes; Martin J van den Bent; Wolfgang Wick; Monika E Hegi
Journal:  Nat Rev Neurol       Date:  2009-12-08       Impact factor: 42.937

4.  Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry.

Authors:  Mathias Ehrich; Matthew R Nelson; Patrick Stanssens; Marc Zabeau; Triantafillos Liloglou; George Xinarianos; Charles R Cantor; John K Field; Dirk van den Boom
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

5.  Quantitative assessment of promoter hypermethylation during breast cancer development.

Authors:  Ulrich Lehmann; Florian Länger; Henning Feist; Sabine Glöckner; Britta Hasemeier; Hans Kreipe
Journal:  Am J Pathol       Date:  2002-02       Impact factor: 4.307

6.  HOXA methylation in normal endometrium from premenopausal women is associated with the presence of ovarian cancer: a proof of principle study.

Authors:  Martin Widschwendter; Sophia Apostolidou; Allison A Jones; Evangelia O Fourkala; Rupali Arora; Celeste Leigh Pearce; Melissa A Frasco; Ayse Ayhan; Michal Zikan; David Cibula; Cem A Iyibozkurt; Ekrem Yavuz; Cornelia Hauser-Kronberger; Louis Dubeau; Usha Menon; Ian J Jacobs
Journal:  Int J Cancer       Date:  2009-11-01       Impact factor: 7.396

7.  Outcome prediction and risk assessment by quantitative pyrosequencing methylation analysis of the SFN gene in advanced stage, high-risk, neuroblastic tumor patients.

Authors:  Barbara Banelli; Stefano Bonassi; Ida Casciano; Katia Mazzocco; Angela Di Vinci; Paola Scaruffi; Claudio Brigati; Giorgio Allemanni; Luana Borzì; Gian Paolo Tonini; Massimo Romani
Journal:  Int J Cancer       Date:  2010-02-01       Impact factor: 7.396

8.  Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay.

Authors:  Tibor Rauch; Zunde Wang; Xinmin Zhang; Xueyan Zhong; Xiwei Wu; Sean K Lau; Kemp H Kernstine; Arthur D Riggs; Gerd P Pfeifer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

9.  Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands.

Authors:  J G Herman; J R Graff; S Myöhänen; B D Nelkin; S B Baylin
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

Review 10.  Correlation of O6-methylguanine methyltransferase (MGMT) promoter methylation with clinical outcomes in glioblastoma and clinical strategies to modulate MGMT activity.

Authors:  Monika E Hegi; Lili Liu; James G Herman; Roger Stupp; Wolfgang Wick; Michael Weller; Minesh P Mehta; Mark R Gilbert
Journal:  J Clin Oncol       Date:  2008-09-01       Impact factor: 44.544

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  16 in total

1.  A key role for EZH2 in epigenetic silencing of HOX genes in mantle cell lymphoma.

Authors:  Meena Kanduri; Birgitta Sander; Stavroula Ntoufa; Nikos Papakonstantinou; Lesley-Ann Sutton; Kostas Stamatopoulos; Chandrasekhar Kanduri; Richard Rosenquist
Journal:  Epigenetics       Date:  2013-10-09       Impact factor: 4.528

2.  Promoter methylation of AREG, HOXA11, hMLH1, NDRG2, NPTX2 and Tes genes in glioblastoma.

Authors:  Daina Skiriutė; Paulina Vaitkienė; Virginija Ašmonienė; Giedrius Steponaitis; Vytenis Pranas Deltuva; Arimantas Tamašauskas
Journal:  J Neurooncol       Date:  2013-04-28       Impact factor: 4.130

3.  HOXA10 controls proliferation, migration and invasion in oral squamous cell carcinoma.

Authors:  Manoela Carrera; Carolina C Bitu; Carine Ervolino de Oliveira; Nilva K Cervigne; Edgard Graner; Aki Manninen; Tuula Salo; Ricardo D Coletta
Journal:  Int J Clin Exp Pathol       Date:  2015-04-01

4.  Integrated Bioinformatic Analysis of the Correlation of HOXA10 Expression with Survival and Immune Cell Infiltration in Lower Grade Glioma.

Authors:  Ting Wang; Mingqian Liu; Ming Jia
Journal:  Biochem Genet       Date:  2022-07-14       Impact factor: 2.220

5.  Silencing Pre-B-cell leukemia homeobox 3 decreases the proliferation of human glioma cells in vitro and in vivo.

Authors:  Xiupeng Xu; Ning Cai; Zhongyuan Bao; Yongping You; Jing Ji; Ning Liu
Journal:  J Neurooncol       Date:  2017-08-30       Impact factor: 4.130

Review 6.  Glioma diagnostics and biomarkers: an ongoing challenge in the field of medicine and science.

Authors:  Fred H Hochberg; Nadia A Atai; David Gonda; Michael S Hughes; Brolin Mawejje; Leonora Balaj; Robert S Carter
Journal:  Expert Rev Mol Diagn       Date:  2014-05       Impact factor: 5.225

7.  HOTAIRM1, an enhancer lncRNA, promotes glioma proliferation by regulating long-range chromatin interactions within HOXA cluster genes.

Authors:  Tengfei Shi; Dianhao Guo; Heming Xu; Guangsong Su; Jun Chen; Zhongfang Zhao; Jiandang Shi; Michelle Wedemeyer; Frank Attenello; Lei Zhang; Wange Lu
Journal:  Mol Biol Rep       Date:  2020-03-16       Impact factor: 2.316

8.  The histone demethylase KDM5A is a key factor for the resistance to temozolomide in glioblastoma.

Authors:  Barbara Banelli; Elisa Carra; Federica Barbieri; Roberto Würth; Federica Parodi; Alessandra Pattarozzi; Roberta Carosio; Alessandra Forlani; Giorgio Allemanni; Daniela Marubbi; Tullio Florio; Antonio Daga; Massimo Romani
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

9.  EDNRB and DCC salivary rinse hypermethylation has a similar performance as expert clinical examination in discrimination of oral cancer/dysplasia versus benign lesions.

Authors:  Juliana Schussel; Xian Chong Zhou; Zhe Zhang; Kavita Pattani; Francisco Bermudez; Germain Jean-Charles; Thomas McCaffrey; Tapan Padhya; Joan Phelan; Silvia Spivakovsky; Mariana Brait; Ryan Li; Helen Yoo Bowne; Judith D Goldberg; Linda Rolnitzky; Miriam Robbins; A Ross Kerr; David Sirois; Joseph A Califano
Journal:  Clin Cancer Res       Date:  2013-05-01       Impact factor: 12.531

10.  DNA methylation, histone modifications, and signal transduction pathways: a close relationship in malignant gliomas pathophysiology.

Authors:  Raúl Alelú-Paz; Nadia Ashour; Ana González-Corpas; Santiago Ropero
Journal:  J Signal Transduct       Date:  2012-07-17
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