Literature DB >> 35836029

Integrated Bioinformatic Analysis of the Correlation of HOXA10 Expression with Survival and Immune Cell Infiltration in Lower Grade Glioma.

Ting Wang1, Mingqian Liu2, Ming Jia3.   

Abstract

Homeobox A10 (HOXA10) encodes a transcription factor that regulates developmental processes. Whether HOXA10 mRNA levels in lower grade glioma (LGG) correlate with survival and immune cell infiltration has not been evaluated. The differential expression of HOXA10 in different tumors and their corresponding normal tissues was evaluated by exploring public datasets. The correlations between HOXA10 and survival, tumor immune cell infiltration, diverse gene mutation characteristics, and tumor mutation burden in LGG were also investigated using several independent datasets. Pathway enrichment analysis was conducted to identify HOXA10-associated signaling pathways. We found that HOXA10 expression levels did not significantly differ between LGG tumors and normal tissues. Upon assessing the association between HOXA10 expression and immune cell infiltration in LGG, as expected, HOXA10 gene mRNA levels were positively associated with B-cell and dendritic cell infiltration levels in public online datasets. Different HOXA10 expression groups showed diverse gene mutation characteristics and TMB, and low HOXA10 expression was closely related to improved LGG patient survival. Pathway enrichment analysis of HOXA10-associated genes indicated that the cell cycle signaling pathway may participate in affecting the outcomes of LGG patients. Our findings showed that HOXA10 expression was associated with LGG prognosis and tumor immunity.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  HOXA10; Lower grade glioma; Survival; Tumor immunity; Tumor mutation burden

Year:  2022        PMID: 35836029     DOI: 10.1007/s10528-022-10258-9

Source DB:  PubMed          Journal:  Biochem Genet        ISSN: 0006-2928            Impact factor:   2.220


  46 in total

1.  HOXA10 regulates p53 expression and matrigel invasion in human breast cancer cells.

Authors:  Micheline C Chu; F Belgin Selam; Hugh S Taylor
Journal:  Cancer Biol Ther       Date:  2004-06-15       Impact factor: 4.742

2.  Functional analysis of HOXA10 and HOXB4 in human medulloblastoma cell lines.

Authors:  Ricardo Bonfim-Silva; Fernanda Ursoli Ferreira Melo; Carolina Hassibe Thomé; Kuruvilla Joseph Abraham; Fábio Augusto Labre De Souza; Fernando Silva Ramalho; Hélio Rubens Machado; Ricardo Santos De Oliveira; Angelo A Cardoso; Dimas Tadeu Covas; Aparecida Maria Fontes
Journal:  Int J Oncol       Date:  2017-10-10       Impact factor: 5.650

3.  HOXB7: a key factor for tumor-associated angiogenic switch.

Authors:  A Carè; F Felicetti; E Meccia; L Bottero; M Parenza; A Stoppacciaro; C Peschle; M P Colombo
Journal:  Cancer Res       Date:  2001-09-01       Impact factor: 12.701

4.  p21 is a transcriptional target of HOXA10 in differentiating myelomonocytic cells.

Authors:  V C Bromleigh; L P Freedman
Journal:  Genes Dev       Date:  2000-10-15       Impact factor: 11.361

5.  HOXA10 controls proliferation, migration and invasion in oral squamous cell carcinoma.

Authors:  Manoela Carrera; Carolina C Bitu; Carine Ervolino de Oliveira; Nilva K Cervigne; Edgard Graner; Aki Manninen; Tuula Salo; Ricardo D Coletta
Journal:  Int J Clin Exp Pathol       Date:  2015-04-01

6.  Transduction of the SkBr3 breast carcinoma cell line with the HOXB7 gene induces bFGF expression, increases cell proliferation and reduces growth factor dependence.

Authors:  A Caré; A Silvani; E Meccia; G Mattia; C Peschle; M P Colombo
Journal:  Oncogene       Date:  1998-06-25       Impact factor: 9.867

7.  RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas.

Authors:  Zhao-Shi Bao; Hui-Min Chen; Ming-Yu Yang; Chuan-Bao Zhang; Kai Yu; Wan-Lu Ye; Bo-Qiang Hu; Wei Yan; Wei Zhang; Johnny Akers; Valya Ramakrishnan; Jie Li; Bob Carter; Yan-Wei Liu; Hui-Min Hu; Zheng Wang; Ming-Yang Li; Kun Yao; Xiao-Guang Qiu; Chun-Sheng Kang; Yong-Ping You; Xiao-Long Fan; Wei Sonya Song; Rui-Qiang Li; Xiao-Dong Su; Clark C Chen; Tao Jiang
Journal:  Genome Res       Date:  2014-08-18       Impact factor: 9.043

8.  A GBM-like V-ATPase signature directs cell-cell tumor signaling and reprogramming via large oncosomes.

Authors:  Irene Bertolini; Andrea Terrasi; Cristina Martelli; Gabriella Gaudioso; Andrea Di Cristofori; Alessandra Maria Storaci; Miriam Formica; Paola Braidotti; Katia Todoerti; Stefano Ferrero; Manuela Caroli; Luisa Ottobrini; Thomas Vaccari; Valentina Vaira
Journal:  EBioMedicine       Date:  2019-02-06       Impact factor: 8.143

Review 9.  High-dimensional immune-profiling in cancer: implications for immunotherapy.

Authors:  Samuel Chuah; Valerie Chew
Journal:  J Immunother Cancer       Date:  2020-02       Impact factor: 13.751

10.  Systematic pan-cancer analysis of tumour purity.

Authors:  Dvir Aran; Marina Sirota; Atul J Butte
Journal:  Nat Commun       Date:  2015-12-04       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.