Literature DB >> 21941616

Cancer Epigenetics for the 21st Century: What's Next?

Manel Esteller1.   

Abstract

The discovery of global DNA hypomethylation events in human tumors in the early 1980s and the identification of CpG island promoter hypermethylation of tumor suppressor genes in cancer cells in the mid 1990s opened the door to the current excitement about the contribution of epigenetic disruption to human disease. The recent gigantic advances in technology make it possible to obtain complete DNA methylomes, histonomes, and non-coding RNA transcriptomes for many biological settings and their associated disorders. Furthermore, whole genome sequencing analyses yields an increasing number of mutated epigenetic genes in neoplasia. It is time to sit back, enjoy the show with a little help of friendly bioinformatic tools, and wonder about what will happen next.

Entities:  

Keywords:  DNA methylation; cancer; epigenetics; histone; microRNA

Year:  2011        PMID: 21941616      PMCID: PMC3174266          DOI: 10.1177/1947601911423096

Source DB:  PubMed          Journal:  Genes Cancer        ISSN: 1947-6019


  37 in total

Review 1.  Phenotypic plasticity and the epigenetics of human disease.

Authors:  Andrew P Feinberg
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

2.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

3.  Epigenetics: Tet proteins in the limelight.

Authors:  Nathalie Véron; Antoine H F M Peters
Journal:  Nature       Date:  2011-05-19       Impact factor: 49.962

Review 4.  The epigenomics of cancer.

Authors:  Peter A Jones; Stephen B Baylin
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

5.  Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma.

Authors:  Siân Jones; Tian-Li Wang; Ie-Ming Shih; Tsui-Lien Mao; Kentaro Nakayama; Richard Roden; Ruth Glas; Dennis Slamon; Luis A Diaz; Bert Vogelstein; Kenneth W Kinzler; Victor E Velculescu; Nickolas Papadopoulos
Journal:  Science       Date:  2010-09-08       Impact factor: 47.728

6.  Global histone modification patterns predict risk of prostate cancer recurrence.

Authors:  David B Seligson; Steve Horvath; Tao Shi; Hong Yu; Sheila Tze; Michael Grunstein; Siavash K Kurdistani
Journal:  Nature       Date:  2005-06-30       Impact factor: 49.962

7.  A genetic defect in exportin-5 traps precursor microRNAs in the nucleus of cancer cells.

Authors:  Sonia A Melo; Catia Moutinho; Santiago Ropero; George A Calin; Simona Rossi; Riccardo Spizzo; Agustin F Fernandez; Veronica Davalos; Alberto Villanueva; Guillermo Montoya; Hiroyuki Yamamoto; Simo Schwartz; Manel Esteller
Journal:  Cancer Cell       Date:  2010-10-19       Impact factor: 31.743

8.  Salermide, a Sirtuin inhibitor with a strong cancer-specific proapoptotic effect.

Authors:  E Lara; A Mai; V Calvanese; L Altucci; P Lopez-Nieva; M L Martinez-Chantar; M Varela-Rey; D Rotili; A Nebbioso; S Ropero; G Montoya; J Oyarzabal; S Velasco; M Serrano; M Witt; A Villar-Garea; A Imhof; A Inhof; J M Mato; M Esteller; M F Fraga
Journal:  Oncogene       Date:  2008-12-08       Impact factor: 9.867

9.  Increased methylation variation in epigenetic domains across cancer types.

Authors:  Kasper Daniel Hansen; Winston Timp; Héctor Corrada Bravo; Sarven Sabunciyan; Benjamin Langmead; Oliver G McDonald; Bo Wen; Hao Wu; Yun Liu; Dinh Diep; Eirikur Briem; Kun Zhang; Rafael A Irizarry; Andrew P Feinberg
Journal:  Nat Genet       Date:  2011-06-26       Impact factor: 38.330

10.  Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer.

Authors:  Gijs van Haaften; Gillian L Dalgliesh; Helen Davies; Lina Chen; Graham Bignell; Chris Greenman; Sarah Edkins; Claire Hardy; Sarah O'Meara; Jon Teague; Adam Butler; Jonathan Hinton; Calli Latimer; Jenny Andrews; Syd Barthorpe; Dave Beare; Gemma Buck; Peter J Campbell; Jennifer Cole; Simon Forbes; Mingming Jia; David Jones; Chai Yin Kok; Catherine Leroy; Meng-Lay Lin; David J McBride; Mark Maddison; Simon Maquire; Kirsten McLay; Andrew Menzies; Tatiana Mironenko; Lee Mulderrig; Laura Mudie; Erin Pleasance; Rebecca Shepherd; Raffaella Smith; Lucy Stebbings; Philip Stephens; Gurpreet Tang; Patrick S Tarpey; Rachel Turner; Kelly Turrell; Jennifer Varian; Sofie West; Sara Widaa; Paul Wray; V Peter Collins; Koichi Ichimura; Simon Law; John Wong; Siu Tsan Yuen; Suet Yi Leung; Giovanni Tonon; Ronald A DePinho; Yu-Tzu Tai; Kenneth C Anderson; Richard J Kahnoski; Aaron Massie; Sok Kean Khoo; Bin Tean Teh; Michael R Stratton; P Andrew Futreal
Journal:  Nat Genet       Date:  2009-03-29       Impact factor: 38.330

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  28 in total

Review 1.  Aberrant DNA methylation in human cancers.

Authors:  Wen Li; Bi-Feng Chen
Journal:  J Huazhong Univ Sci Technolog Med Sci       Date:  2013-12-13

2.  Identification of a novel leukemic-specific splice variant of DNMT3B and its stability.

Authors:  Prachi Singh; Sarvagalla Sailu; Elango Palchamy; Mohane Selvaraj Coumar; Sudhakar Baluchamy
Journal:  Med Oncol       Date:  2017-07-20       Impact factor: 3.064

3.  MiR-451 inhibits proliferation of esophageal carcinoma cell line EC9706 by targeting CDKN2D and MAP3K1.

Authors:  Wen-Qiao Zang; Xuan Yang; Tao Wang; Yuan-Yuan Wang; Yu-Wen Du; Xiao-Nan Chen; Min Li; Guo-Qiang Zhao
Journal:  World J Gastroenterol       Date:  2015-05-21       Impact factor: 5.742

Review 4.  Mammalian Sirtuins and Their Relevance in Vascular Calcification.

Authors:  Xinyue Pan; Caixia Pi; Xianchun Ruan; Hanhua Zheng; Demao Zhang; Xiaoheng Liu
Journal:  Front Pharmacol       Date:  2022-05-23       Impact factor: 5.988

Review 5.  Epigenetics in non-small cell lung cancer: from basics to therapeutics.

Authors:  Junaid Ansari; Rodney E Shackelford; Hazem El-Osta
Journal:  Transl Lung Cancer Res       Date:  2016-04

6.  p53 Ser15 phosphorylation and histone modifications contribute to IR-induced miR-34a transcription in mammary epithelial cells.

Authors:  Bo Wang; Dongping Li; Olga Kovalchuk
Journal:  Cell Cycle       Date:  2013-06-06       Impact factor: 4.534

Review 7.  New strategies in lung cancer: epigenetic therapy for non-small cell lung cancer.

Authors:  Patrick M Forde; Julie R Brahmer; Ronan J Kelly
Journal:  Clin Cancer Res       Date:  2014-03-18       Impact factor: 12.531

8.  Expression of DNMTs and MBD2 in GIST.

Authors:  Miao He; Jing Fan; Rong Jiang; Wei-Xue Tang; Zi-Wei Wang
Journal:  Biomed Rep       Date:  2012-10-29

9.  Clinical impact of PTEN methylation status as a prognostic marker for breast cancer.

Authors:  Amal Ramadan; Maha Hashim; Amr Abouzid; Menha Swellam
Journal:  J Genet Eng Biotechnol       Date:  2021-05-10

10.  Do epigenetic marks govern bone mass and homeostasis?

Authors:  Jesús Delgado-Calle; Pablo Garmilla; José A Riancho
Journal:  Curr Genomics       Date:  2012-05       Impact factor: 2.236

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