Literature DB >> 21941129

Designer RNA-binding proteins: New tools for manipulating the transcriptome.

Aleksandra Filipovska1, Oliver Rackham.   

Abstract

Post-transcriptional regulation of gene expression is ubiquitous and fundamental for the control of cell growth, differentiation and the complex developmental programs of multicellular eukaryotes. Despite this realization, the current tools that are available to study RNAs are limited in many respects. Recently we expanded the RNA recognition code of Pumilio and FBF homology (PUF) proteins, enabling RNA-binding proteins with programmable specificities to be designed. The design of proteins that can bind any RNA sequence of interest and modulate its function will be important to elucidate the mechanisms by which gene expression is controlled at the level of RNA and may provide potential therapeutics in the future.

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Year:  2011        PMID: 21941129     DOI: 10.4161/rna.8.6.17907

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  18 in total

1.  DNA sense-and-respond protein modules for mammalian cells.

Authors:  Shimyn Slomovic; James J Collins
Journal:  Nat Methods       Date:  2015-09-21       Impact factor: 28.547

2.  Pentatricopeptide repeats: modular blocks for building RNA-binding proteins.

Authors:  Aleksandra Filipovska; Oliver Rackham
Journal:  RNA Biol       Date:  2013-04-23       Impact factor: 4.652

3.  A Nucleolar PUF RNA-binding Protein with Specificity for a Unique RNA Sequence.

Authors:  Chi Zhang; Douglas G Muench
Journal:  J Biol Chem       Date:  2015-10-20       Impact factor: 5.157

Review 4.  Post-transcriptional coordination of immunological responses by RNA-binding proteins.

Authors:  Panagiota Kafasla; Antonis Skliris; Dimitris L Kontoyiannis
Journal:  Nat Immunol       Date:  2014-06       Impact factor: 25.606

5.  Cas13b Is a Type VI-B CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx27 and Csx28.

Authors:  Aaron A Smargon; David B T Cox; Neena K Pyzocha; Kaijie Zheng; Ian M Slaymaker; Jonathan S Gootenberg; Omar A Abudayyeh; Patrick Essletzbichler; Sergey Shmakov; Kira S Makarova; Eugene V Koonin; Feng Zhang
Journal:  Mol Cell       Date:  2017-01-05       Impact factor: 17.970

6.  Ribonucleoprotein Capture by in Vivo Expression of a Designer Pentatricopeptide Repeat Protein in Arabidopsis.

Authors:  James J McDermott; Kenneth P Watkins; Rosalind Williams-Carrier; Alice Barkan
Journal:  Plant Cell       Date:  2019-05-23       Impact factor: 11.277

Review 7.  Manipulating and elucidating mitochondrial gene expression with engineered proteins.

Authors:  Christopher P Wallis; Louis H Scott; Aleksandra Filipovska; Oliver Rackham
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-12-02       Impact factor: 6.237

8.  Specific Recognition of a Single-Stranded RNA Sequence by a Synthetic Antibody Fragment.

Authors:  Yaming Shao; Hao Huang; Daoming Qin; Nan-Sheng Li; Akiko Koide; Jonathan P Staley; Shohei Koide; Anthony A Kossiakoff; Joseph A Piccirilli
Journal:  J Mol Biol       Date:  2016-09-02       Impact factor: 5.469

9.  C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector.

Authors:  Omar O Abudayyeh; Jonathan S Gootenberg; Silvana Konermann; Julia Joung; Ian M Slaymaker; David B T Cox; Sergey Shmakov; Kira S Makarova; Ekaterina Semenova; Leonid Minakhin; Konstantin Severinov; Aviv Regev; Eric S Lander; Eugene V Koonin; Feng Zhang
Journal:  Science       Date:  2016-06-02       Impact factor: 47.728

10.  Role of Arabidopsis Pumilio RNA binding protein 5 in virus infection.

Authors:  Sung Un Huh; Kyung-Hee Paek
Journal:  Plant Signal Behav       Date:  2013-03-19
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