Literature DB >> 21940499

Conformation of self-assembled porphyrin dimers in liposome vesicles by phase-modulation 2D fluorescence spectroscopy.

Geoffrey A Lott1, Alejandro Perdomo-Ortiz, James K Utterback, Julia R Widom, Alán Aspuru-Guzik, Andrew H Marcus.   

Abstract

By applying a phase-modulation fluorescence approach to 2D electronic spectroscopy, we studied the conformation-dependent exciton coupling of a porphyrin dimer embedded in a phospholipid bilayer membrane. Our measurements specify the relative angle and separation between interacting electronic transition dipole moments and thus provide a detailed characterization of dimer conformation. Phase-modulation 2D fluorescence spectroscopy (PM-2D FS) produces 2D spectra with distinct optical features, similar to those obtained using 2D photon-echo spectroscopy. Specifically, we studied magnesium meso tetraphenylporphyrin dimers, which form in the amphiphilic regions of 1,2-distearoyl-sn-glycero-3-phosphocholine liposomes. Comparison between experimental and simulated spectra show that although a wide range of dimer conformations can be inferred by either the linear absorption spectrum or the 2D spectrum alone, consideration of both types of spectra constrain the possible structures to a "T-shaped" geometry. These experiments establish the PM-2D FS method as an effective approach to elucidate chromophore dimer conformation.

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Year:  2011        PMID: 21940499      PMCID: PMC3189026          DOI: 10.1073/pnas.1017308108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

Review 1.  Ultrafast vibrational dynamics and local interactions of hydrated DNA.

Authors:  Łukasz Szyc; Ming Yang; Erik T J Nibbering; Thomas Elsaesser
Journal:  Angew Chem Int Ed Engl       Date:  2010-05-10       Impact factor: 15.336

2.  Coherent control of cross-peaks in chirality-induced two-dimensional optical signals of excitons.

Authors:  Dmitri V Voronine; Darius Abramavicius; Shaul Mukamel
Journal:  J Chem Phys       Date:  2006-12-14       Impact factor: 3.488

3.  The integrated photon echo and solvation dynamics. II. Peak shifts and two-dimensional photon echo of a coupled chromophore system.

Authors:  Minhaeng Cho; Graham R Fleming
Journal:  J Chem Phys       Date:  2005-09-15       Impact factor: 3.488

4.  Polarization-dependent optical 2D Fourier transform spectroscopy of semiconductors.

Authors:  Tianhao Zhang; Irina Kuznetsova; Torsten Meier; Xiaoqin Li; Richard P Mirin; Peter Thomas; Steven T Cundiff
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-13       Impact factor: 11.205

Review 5.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

6.  Theory and phase-cycling scheme selection principles of collinear phase coherent multi-dimensional optical spectroscopy.

Authors:  Howe-Siang Tan
Journal:  J Chem Phys       Date:  2008-09-28       Impact factor: 3.488

7.  Using wave-packet interferometry to monitor the external vibrational control of electronic excitation transfer.

Authors:  Jason D Biggs; Jeffrey A Cina
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

8.  Visualization of excitonic structure in the Fenna-Matthews-Olson photosynthetic complex by polarization-dependent two-dimensional electronic spectroscopy.

Authors:  Elizabeth L Read; Gabriela S Schlau-Cohen; Gregory S Engel; Jianzhong Wen; Robert E Blankenship; Graham R Fleming
Journal:  Biophys J       Date:  2008-03-28       Impact factor: 4.033

9.  Spectroscopy and structure of bacteriochlorophyll dimers. I. Structural consequences of nonconservative circular dichroism spectra.

Authors:  M H Koolhaas; G van der Zwan; F van Mourik; R van Grondelle
Journal:  Biophys J       Date:  1997-04       Impact factor: 4.033

10.  Dynamics around solutes and solute-solvent complexes in mixed solvents.

Authors:  Kyungwon Kwak; Sungnam Park; M D Fayer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-20       Impact factor: 11.205

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  17 in total

1.  Quantum state and process tomography of energy transfer systems via ultrafast spectroscopy.

Authors:  Joel Yuen-Zhou; Jacob J Krich; Masoud Mohseni; Alán Aspuru-Guzik
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-12       Impact factor: 11.205

2.  Multidimensional optical spectroscopy of a single molecule in a current-carrying state.

Authors:  S Rahav; S Mukamel
Journal:  J Chem Phys       Date:  2010-12-28       Impact factor: 3.488

3.  Zeeman shift of two-dimensional optical signals of Mg-porphyrin dimers with circularly polarized beams.

Authors:  Justo J Rodriguez; Shaul Mukamel
Journal:  J Chem Phys       Date:  2012-11-28       Impact factor: 3.488

4.  Multidimensional spectroscopy of photoreactivity.

Authors:  Stefan Ruetzel; Meike Diekmann; Patrick Nuernberger; Christof Walter; Bernd Engels; Tobias Brixner
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

5.  Measuring local conformations and conformational disorder of (Cy3)2 dimer labeled DNA fork junctions using absorbance, circular dichroism and two-dimensional fluorescence spectroscopy.

Authors:  Dylan Heussman; Justin Kittell; Loni Kringle; Amr Tamimi; Peter H von Hippel; Andrew H Marcus
Journal:  Faraday Discuss       Date:  2019-07-11       Impact factor: 4.008

6.  Temperature-dependent conformations of a membrane supported zinc porphyrin tweezer by 2D fluorescence spectroscopy.

Authors:  Julia R Widom; Wonbae Lee; Alejandro Perdomo-Ortiz; Dmitrij Rappoport; Tadeusz F Molinski; Alán Aspuru-Guzik; Andrew H Marcus
Journal:  J Phys Chem A       Date:  2013-03-29       Impact factor: 2.781

Review 7.  Fifty years of DNA "breathing": Reflections on old and new approaches.

Authors:  Peter H von Hippel; Neil P Johnson; Andrew H Marcus
Journal:  Biopolymers       Date:  2013-12       Impact factor: 2.505

8.  Solution conformation of 2-aminopurine (2-AP) dinucleotide determined by ultraviolet 2D fluorescence spectroscopy (UV-2D FS).

Authors:  Julia R Widom; Neil P Johnson; Peter H von Hippel; Andrew H Marcus
Journal:  New J Phys       Date:  2013-02-01       Impact factor: 3.729

9.  Temperature-dependent local conformations and conformational distributions of cyanine dimer labeled single-stranded-double-stranded DNA junctions by 2D fluorescence spectroscopy.

Authors:  Dylan Heussman; Justin Kittell; Peter H von Hippel; Andrew H Marcus
Journal:  J Chem Phys       Date:  2022-01-28       Impact factor: 4.304

10.  Electronic transition moments of 6-methyl isoxanthopterin--a fluorescent analogue of the nucleic acid base guanine.

Authors:  Julia R Widom; Dmitrij Rappoport; Alejandro Perdomo-Ortiz; Hanna Thomsen; Neil P Johnson; Peter H von Hippel; Alán Aspuru-Guzik; Andrew H Marcus
Journal:  Nucleic Acids Res       Date:  2012-11-26       Impact factor: 16.971

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