Literature DB >> 21940479

Evaluation of Aspergillus PCR protocols for testing serum specimens.

P Lewis White1, Carlo Mengoli, Stéphane Bretagne, Manuel Cuenca-Estrella, Niklas Finnstrom, Lena Klingspor, Willem J G Melchers, Elaine McCulloch, Rosemary A Barnes, J Peter Donnelly, Juergen Loeffler.   

Abstract

A panel of human serum samples spiked with various amounts of Aspergillus fumigatus genomic DNA was distributed to 23 centers within the European Aspergillus PCR Initiative to determine analytical performance of PCR. Information regarding specific methodological components and PCR performance was requested. The information provided was made anonymous, and meta-regression analysis was performed to determine any procedural factors that significantly altered PCR performance. Ninety-seven percent of protocols were able to detect a threshold of 10 genomes/ml on at least one occasion, with 83% of protocols reproducibly detecting this concentration. Sensitivity and specificity were 86.1% and 93.6%, respectively. Positive associations between sensitivity and the use of larger sample volumes, an internal control PCR, and PCR targeting the internal transcribed spacer (ITS) region were shown. Negative associations between sensitivity and the use of larger elution volumes (≥100 μl) and PCR targeting the mitochondrial genes were demonstrated. Most Aspergillus PCR protocols used to test serum generate satisfactory analytical performance. Testing serum requires less standardization, and the specific recommendations shown in this article will only improve performance.

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Year:  2011        PMID: 21940479      PMCID: PMC3209112          DOI: 10.1128/JCM.05316-11

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  14 in total

1.  Diagnosis of invasive aspergillosis in bone marrow transplant recipients by polymerase chain reaction.

Authors:  E C Williamson; J P Leeming; H M Palmer; C G Steward; D Warnock; D I Marks; M R Millar
Journal:  Br J Haematol       Date:  2000-01       Impact factor: 6.998

2.  Use of real-time PCR to process the first galactomannan-positive serum sample in diagnosing invasive aspergillosis.

Authors:  Laurence Millon; Renaud Piarroux; Eric Deconinck; Claude-Eric Bulabois; Frédéric Grenouillet; Pierre Rohrlich; Jean-Marc Costa; Stéphane Bretagne
Journal:  J Clin Microbiol       Date:  2005-10       Impact factor: 5.948

3.  Comparison of serum galactomannan antigen detection and competitive polymerase chain reaction for diagnosing invasive aspergillosis.

Authors:  S Bretagne; J M Costa; E Bart-Delabesse; N Dhédin; C Rieux; C Cordonnier
Journal:  Clin Infect Dis       Date:  1998-06       Impact factor: 9.079

4.  Real-time PCR coupled with automated DNA extraction and detection of galactomannan antigen in serum by enzyme-linked immunosorbent assay for diagnosis of invasive aspergillosis.

Authors:  Catherine Costa; Jean-Marc Costa; Christophe Desterke; Françoise Botterel; Catherine Cordonnier; Stéphane Bretagne
Journal:  J Clin Microbiol       Date:  2002-06       Impact factor: 5.948

5.  Ribosomal and mitochondrial DNA target for real-time PCR diagnosis of invasive aspergillosis.

Authors:  L Millon; F Grenouillet; F Legrand; S Loewert; A P Bellanger; H Gbaguidi-Haore; E Scherer; T Henon; P Rohrlich; E Deconinck
Journal:  J Clin Microbiol       Date:  2011-01-12       Impact factor: 5.948

6.  The evolution and evaluation of a whole blood polymerase chain reaction assay for the detection of invasive aspergillosis in hematology patients in a routine clinical setting.

Authors:  P Lewis White; Christopher J Linton; Michael D Perry; Elizabeth M Johnson; Rosemary A Barnes
Journal:  Clin Infect Dis       Date:  2006-01-17       Impact factor: 9.079

7.  In vitro release by Aspergillus fumigatus of galactofuranose antigens, 1,3-beta-D-glucan, and DNA, surrogate markers used for diagnosis of invasive aspergillosis.

Authors:  Monique A S H Mennink-Kersten; Dorien Ruegebrink; Nazhat Wasei; Willem J G Melchers; Paul E Verweij
Journal:  J Clin Microbiol       Date:  2006-05       Impact factor: 5.948

8.  Towards complete and accurate reporting of studies of diagnostic accuracy: the STARD initiative.

Authors:  Patrick M Bossuyt; Johannes B Reitsma; David E Bruns; Constantine A Gatsonis; Paul P Glasziou; Les M Irwig; Jeroen G Lijmer; David Moher; Drummond Rennie; Henrica C W de Vet
Journal:  Fam Pract       Date:  2004-02       Impact factor: 2.267

9.  Diagnosis of invasive mold infection by real-time quantitative PCR.

Authors:  Audrey S Pham; Jeffrey J Tarrand; Gregory S May; Ming S Lee; Dimitrios P Kontoyiannis; Xiang Y Han
Journal:  Am J Clin Pathol       Date:  2003-01       Impact factor: 2.493

10.  Rapid detection and identification of Candida, Aspergillus, and Fusarium species in ocular samples using nested PCR.

Authors:  E E Jaeger; N M Carroll; S Choudhury; A A Dunlop; H M Towler; M M Matheson; P Adamson; N Okhravi; S Lightman
Journal:  J Clin Microbiol       Date:  2000-08       Impact factor: 5.948

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  41 in total

1.  Comparison of Performance Characteristics of Aspergillus PCR in Testing a Range of Blood-Based Samples in Accordance with International Methodological Recommendations.

Authors:  Jan Springer; P Lewis White; Shanna Hamilton; Denise Michel; Rosemary A Barnes; Hermann Einsele; Juergen Löffler
Journal:  J Clin Microbiol       Date:  2016-01-06       Impact factor: 5.948

2.  A novel extraction method combining plasma with a whole-blood fraction shows excellent sensitivity and reproducibility for patients at high risk for invasive aspergillosis.

Authors:  Jan Springer; Hannes Schloßnagel; Werner Heinz; Thomas Doedt; Rainer Soeller; Hermann Einsele; Juergen Loeffler
Journal:  J Clin Microbiol       Date:  2012-05-16       Impact factor: 5.948

3.  Analytical and Clinical Evaluation of the PathoNostics AsperGenius Assay for Detection of Invasive Aspergillosis and Resistance to Azole Antifungal Drugs during Testing of Serum Samples.

Authors:  P Lewis White; Raquel B Posso; Rosemary A Barnes
Journal:  J Clin Microbiol       Date:  2015-04-22       Impact factor: 5.948

4.  A Comparison of Aspergillus and Mucorales PCR Testing of Different Bronchoalveolar Lavage Fluid Fractions from Patients with Suspected Invasive Pulmonary Fungal Disease.

Authors:  Jan Springer; P Lewis White; Johanna Kessel; Imke Wieters; Daniel Teschner; Daniel Korczynski; Tobias Liebregts; Oliver A Cornely; Stefan Schwartz; Thomas Elgeti; Lisa Meintker; Stefan W Krause; Raquel B Posso; Werner J Heinz; Sandra Fuhrmann; Jörg Janne Vehreschild; Hermann Einsele; Volker Rickerts; Juergen Loeffler
Journal:  J Clin Microbiol       Date:  2018-01-24       Impact factor: 5.948

5.  Evaluation of real-time PCR, galactomannan enzyme-linked immunosorbent assay (ELISA), and a novel lateral-flow device for diagnosis of invasive aspergillosis.

Authors:  P Lewis White; Christian Parr; Christopher Thornton; Rosemary A Barnes
Journal:  J Clin Microbiol       Date:  2013-03-13       Impact factor: 5.948

6.  Development and evaluation of a calibrator material for nucleic acid-based assays for diagnosing aspergillosis.

Authors:  G Marshall Lyon; Deborah Abdul-Ali; Juergen Loeffler; P Lewis White; Brian Wickes; Monica L Herrera; Barbara D Alexander; Lindsey R Baden; Cornelius Clancy; David Denning; M Hong Nguyen; Michele Sugrue; L Joseph Wheat; John R Wingard; J Peter Donnelly; Rosemary Barnes; Thomas F Patterson; Angela M Caliendo
Journal:  J Clin Microbiol       Date:  2013-04-24       Impact factor: 5.948

7.  PCR in diagnosis of invasive aspergillosis: a meta-analysis of diagnostic performance.

Authors:  Marios Arvanitis; Panayiotis D Ziakas; Ioannis M Zacharioudakis; Fainareti N Zervou; Angela M Caliendo; Eleftherios Mylonakis
Journal:  J Clin Microbiol       Date:  2014-08-13       Impact factor: 5.948

8.  Clinical performance of a commercial real-time PCR assay for Aspergillus DNA detection in serum samples from high-risk patients: comparison with a galactomannan enzyme immunoassay.

Authors:  P Pini; C Bettua; C F Orsi; C Venturelli; L Faglioni; F Forghieri; S Bigliardi; F Luppi; M Girardis; E Blasi
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2014-08-01       Impact factor: 3.267

9.  Analytical and Clinical Evaluation of the PathoNostics AsperGenius Assay for Detection of Invasive Aspergillosis and Resistance to Azole Antifungal Drugs Directly from Plasma Samples.

Authors:  P Lewis White; Raquel B Posso; Rosemary A Barnes
Journal:  J Clin Microbiol       Date:  2017-05-17       Impact factor: 5.948

10.  Multicenter comparison of serum and whole-blood specimens for detection of Aspergillus DNA in high-risk hematological patients.

Authors:  Jan Springer; C O Morton; Michael Perry; Werner J Heinz; Melinda Paholcsek; Mona Alzheimer; T R Rogers; Rosemary A Barnes; Hermann Einsele; Juergen Loeffler; P Lewis White
Journal:  J Clin Microbiol       Date:  2013-02-20       Impact factor: 5.948

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