Literature DB >> 21929019

Narrow escape through a funnel and effective diffusion on a crowded membrane.

D Holcman1, N Hoze, Z Schuss.   

Abstract

Particles diffusing on a membrane crowded with obstacles have to squeeze between them through funnel-shaped narrow straits. The computation of the mean passage time through the straits is a new narrow escape problem that gives rise to new, hitherto unknown, behavior that we communicate here. The motion through the straits on the coarse scale of the narrow escape time is an effective diffusion with coefficient that varies nonlinearly with the density of obstacles. We calculate the coarse-grained diffusion coefficient on a planar lattice of circular obstacles and use it to estimate the density of obstacles on a neuronal membrane and in a model of a cytoplasm crowded by identical parallel circular rods.

Mesh:

Year:  2011        PMID: 21929019     DOI: 10.1103/PhysRevE.84.021906

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  10 in total

1.  Diffusion in periodic two-dimensional channels formed by overlapping circles: comparison of analytical and numerical results.

Authors:  Inti Pineda; Marco-Vinicio Vazquez; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2011-12-14       Impact factor: 3.488

2.  Diffusion in the presence of cylindrical obstacles arranged in a square lattice analyzed with generalized Fick-Jacobs equation.

Authors:  Leonardo Dagdug; Marco-Vinicio Vazquez; Alexander M Berezhkovskii; Vladimir Yu Zitserman; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2012-05-28       Impact factor: 3.488

Review 3.  Analysis and Interpretation of Superresolution Single-Particle Trajectories.

Authors:  D Holcman; N Hoze; Z Schuss
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

4.  Residence times of receptors in dendritic spines analyzed by stochastic simulations in empirical domains.

Authors:  Nathanael Hoze; David Holcman
Journal:  Biophys J       Date:  2014-12-16       Impact factor: 4.033

5.  Conductance of porous media depends on external electric fields.

Authors:  Leonid P Savtchenko; Kaiyu Zheng; Dmitri A Rusakov
Journal:  Biophys J       Date:  2021-02-18       Impact factor: 4.033

6.  Unraveling novel features hidden in superresolution microscopy data.

Authors:  David Holcman
Journal:  Commun Integr Biol       Date:  2013-05-01

7.  Diffusion laws in dendritic spines.

Authors:  David Holcman; Zeev Schuss
Journal:  J Math Neurosci       Date:  2011-10-27       Impact factor: 1.300

8.  Drift in Diffusion Gradients.

Authors:  Fabio Marchesoni
Journal:  Materials (Basel)       Date:  2013-08-19       Impact factor: 3.623

9.  Rac1 recruitment to the archipelago structure of the focal adhesion through the fluid membrane as revealed by single-molecule analysis.

Authors:  Akihiro C E Shibata; Limin H Chen; Rie Nagai; Fumiyoshi Ishidate; Rahul Chadda; Yoshihiro Miwa; Keiji Naruse; Yuki M Shirai; Takahiro K Fujiwara; Akihiro Kusumi
Journal:  Cytoskeleton (Hoboken)       Date:  2013-03-05

10.  Inferring Latent States and Refining Force Estimates via Hierarchical Dirichlet Process Modeling in Single Particle Tracking Experiments.

Authors:  Christopher P Calderon; Kerry Bloom
Journal:  PLoS One       Date:  2015-09-18       Impact factor: 3.240

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.