Literature DB >> 21922055

The role of E. coli Nus-factors in transcription regulation and transcription:translation coupling: From structure to mechanism.

Björn M Burmann1, Paul Rösch.   

Abstract

Bacterial transcription mediated by RNA polymerase (RNAP) is a highly regulated process and RNAP action is modulated during the different phases of initiation, elongation and termination by proteins such as the Escherichia coli Nus transcription-factors. Here we discuss the structural interplay and the mechanistic role of the Nus-factors that are directly involved in the processivity of elongation, transcription:translation coupling and termination, as well as the varying effects of these proteins on transcription under the influence of additional signals.

Entities:  

Year:  2011        PMID: 21922055      PMCID: PMC3173649          DOI: 10.4161/trns.2.3.15671

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  36 in total

Review 1.  Sigma and RNA polymerase: an on-again, off-again relationship?

Authors:  Rachel Anne Mooney; Seth A Darst; Robert Landick
Journal:  Mol Cell       Date:  2005-11-11       Impact factor: 17.970

2.  Structural basis for transcription elongation by bacterial RNA polymerase.

Authors:  Dmitry G Vassylyev; Marina N Vassylyeva; Anna Perederina; Tahir H Tahirov; Irina Artsimovitch
Journal:  Nature       Date:  2007-06-20       Impact factor: 49.962

3.  Direct interaction between two Escherichia coli transcription antitermination factors, NusB and ribosomal protein S10.

Authors:  S W Mason; J Li; J Greenblatt
Journal:  J Mol Biol       Date:  1992-01-05       Impact factor: 5.469

4.  Functional specialization of transcription elongation factors.

Authors:  Georgiy A Belogurov; Rachel A Mooney; Vladimir Svetlov; Robert Landick; Irina Artsimovitch
Journal:  EMBO J       Date:  2008-12-18       Impact factor: 11.598

5.  NusA interaction with the α subunit of E. coli RNA polymerase is via the UP element site and releases autoinhibition.

Authors:  Kristian Schweimer; Stefan Prasch; Pagadala Santhanam Sujatha; Mikhail Bubunenko; Max E Gottesman; Paul Rösch
Journal:  Structure       Date:  2011-07-13       Impact factor: 5.006

6.  Effects of rifampicin resistant rpoB mutations on antitermination and interaction with nusA in Escherichia coli.

Authors:  D J Jin; M Cashel; D I Friedman; Y Nakamura; W A Walter; C A Gross
Journal:  J Mol Biol       Date:  1988-11-20       Impact factor: 5.469

7.  Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae.

Authors:  G A Hartzog; T Wada; H Handa; F Winston
Journal:  Genes Dev       Date:  1998-02-01       Impact factor: 11.361

8.  Interaction of the intrinsically unstructured phage lambda N Protein with Escherichia coli NusA.

Authors:  Stefan Prasch; Sabine Schwarz; Anke Eisenmann; Birgitta M Wöhrl; Kristian Schweimer; Paul Rösch
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

9.  Complete structural model of Escherichia coli RNA polymerase from a hybrid approach.

Authors:  Natacha Opalka; Jesse Brown; William J Lane; Kelly-Anne F Twist; Robert Landick; Francisco J Asturias; Seth A Darst
Journal:  PLoS Biol       Date:  2010-09-14       Impact factor: 8.029

10.  Fine tuning of the E. coli NusB:NusE complex affinity to BoxA RNA is required for processive antitermination.

Authors:  Björn M Burmann; Xiao Luo; Paul Rösch; Markus C Wahl; Max E Gottesman
Journal:  Nucleic Acids Res       Date:  2009-10-23       Impact factor: 16.971

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  12 in total

Review 1.  Ubiquitous transcription factors display structural plasticity and diverse functions: NusG proteins - Shifting shapes and paradigms.

Authors:  Monali NandyMazumdar; Irina Artsimovitch
Journal:  Bioessays       Date:  2015-01-15       Impact factor: 4.345

2.  Spatially segregated transcription and translation in cells of the endomembrane-containing bacterium Gemmata obscuriglobus.

Authors:  Ekaterina Y Gottshall; Corrine Seebart; Jesse C Gatlin; Naomi L Ward
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-14       Impact factor: 11.205

Review 3.  RNA polymerase and the ribosome: the close relationship.

Authors:  Katelyn McGary; Evgeny Nudler
Journal:  Curr Opin Microbiol       Date:  2013-02-22       Impact factor: 7.934

4.  Measures of single- versus multiple-round translation argue against a mechanism to ensure coupling of transcription and translation.

Authors:  Menglin Chen; Kurt Fredrick
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-01       Impact factor: 11.205

Review 5.  RNA Polymerase's Relationship with the Ribosome: Not So Physical, Most of the Time.

Authors:  Menglin Chen; Kurt Fredrick
Journal:  J Mol Biol       Date:  2020-03-19       Impact factor: 5.469

6.  Effects of cooperation between translating ribosome and RNA polymerase on termination efficiency of the Rho-independent terminator.

Authors:  Rui Li; Qing Zhang; Junbai Li; Hualin Shi
Journal:  Nucleic Acids Res       Date:  2015-11-23       Impact factor: 16.971

7.  Escherichia coli transcription termination factor NusA: heat-induced oligomerization and chaperone activity.

Authors:  Kun Li; Tianyi Jiang; Bo Yu; Limin Wang; Chao Gao; Cuiqing Ma; Ping Xu; Yanhe Ma
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

8.  Transcription start site associated RNAs in bacteria.

Authors:  Eva Yus; Marc Güell; Ana P Vivancos; Wei-Hua Chen; María Lluch-Senar; Javier Delgado; Anne-Claude Gavin; Peer Bork; Luis Serrano
Journal:  Mol Syst Biol       Date:  2012-05-22       Impact factor: 11.429

9.  Redundancy of primary RNA-binding functions of the bacterial transcription terminator Rho.

Authors:  Rajesh Shashni; M Zuhaib Qayyum; V Vishalini; Debashish Dey; Ranjan Sen
Journal:  Nucleic Acids Res       Date:  2014-07-31       Impact factor: 16.971

10.  Quantitative and predictive model of kinetic regulation by E. coli TPP riboswitches.

Authors:  Sondés Guedich; Barbara Puffer-Enders; Mireille Baltzinger; Guillaume Hoffmann; Cyrielle Da Veiga; Fabrice Jossinet; Stéphane Thore; Guillaume Bec; Eric Ennifar; Dominique Burnouf; Philippe Dumas
Journal:  RNA Biol       Date:  2016-03-01       Impact factor: 4.652

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