Literature DB >> 21914863

Complete genome sequence of Weissella koreensis KACC 15510, isolated from kimchi.

Se Hee Lee1, Ji Young Jung, Seung Hyeon Lee, Che Ok Jeon.   

Abstract

Weissella koreensis KACC 15510 was isolated from kimchi, a representative traditional Korean fermented food. Here, we announce the complete genome sequence of W. koreensis KACC 15510, consisting of a 1,422,478-bp chromosome and one 18,992-bp plasmid, and provide a description of their annotation.

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Year:  2011        PMID: 21914863      PMCID: PMC3187459          DOI: 10.1128/JB.05704-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  9 in total

1.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

2.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

3.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 5.  Biochemical, microbiological, and nutritional aspects of kimchi (Korean fermented vegetable products).

Authors:  H S Cheigh; K Y Park
Journal:  Crit Rev Food Sci Nutr       Date:  1994       Impact factor: 11.176

6.  Metagenomic analysis of kimchi, a traditional Korean fermented food.

Authors:  Ji Young Jung; Se Hee Lee; Jeong Myeong Kim; Moon Su Park; Jin-Woo Bae; Yoonsoo Hahn; Eugene L Madsen; Che Ok Jeon
Journal:  Appl Environ Microbiol       Date:  2011-02-11       Impact factor: 4.792

7.  Leuconostoc kimchii sp. nov., a new species from kimchi.

Authors:  J Kim; J Chun; H U Han
Journal:  Int J Syst Evol Microbiol       Date:  2000-09       Impact factor: 2.747

8.  Weissella koreensis sp. nov., isolated from kimchi.

Authors:  Jung-Sook Lee; Keun Chul Lee; Jong-Seog Ahn; Tae-Ick Mheen; Yu-Ryang Pyun; Yong-Ha Park
Journal:  Int J Syst Evol Microbiol       Date:  2002-07       Impact factor: 2.747

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

  9 in total
  6 in total

1.  Draft genome sequence of Weissella koreensis KCTC 3621T.

Authors:  Je Hee Lee; Jin-Woo Bae; Jongsik Chun
Journal:  J Bacteriol       Date:  2012-10       Impact factor: 3.490

2.  Complete genome sequence of Leuconostoc gelidum strain JB7, isolated from kimchi.

Authors:  Ji Young Jung; Se Hee Lee; Che Ok Jeon
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

3.  Characterization of a minimal pKW2124 replicon from Weissella cibaria KLC140 and its application for the construction of the Weissella expression vector pKUCm1.

Authors:  Hye-Jin Ku; Myeong Soo Park; Ju-Hoon Lee
Journal:  Front Microbiol       Date:  2015-02-03       Impact factor: 5.640

Review 4.  Evolution of small prokaryotic genomes.

Authors:  David J Martínez-Cano; Mariana Reyes-Prieto; Esperanza Martínez-Romero; Laila P Partida-Martínez; Amparo Latorre; Andrés Moya; Luis Delaye
Journal:  Front Microbiol       Date:  2015-01-06       Impact factor: 5.640

5.  Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout.

Authors:  Henrique C P Figueiredo; Siomar C Soares; Felipe L Pereira; Fernanda A Dorella; Alex F Carvalho; Júnia P Teixeira; Vasco A C Azevedo; Carlos A G Leal
Journal:  BMC Genomics       Date:  2015-12-22       Impact factor: 3.969

6.  ODFM, an omics data resource from microorganisms associated with fermented foods.

Authors:  Tae Woong Whon; Seung Woo Ahn; Sungjin Yang; Joon Yong Kim; Yeon Bee Kim; Yujin Kim; Ji-Man Hong; Hojin Jung; Yoon-E Choi; Se Hee Lee; Seong Woon Roh
Journal:  Sci Data       Date:  2021-04-20       Impact factor: 6.444

  6 in total

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