Literature DB >> 2191303

Crystal structure of an active form of RAS protein, a complex of a GTP analog and the HRAS p21 catalytic domain.

A T Brünger1, M V Milburn, L Tong, A M deVos, J Jancarik, Z Yamaizumi, S Nishimura, E Ohtsuka, S H Kim.   

Abstract

Normal RAS proteins play a key role of molecular switch in the transduction of the growth signal from extracellular to intracellular space. The state of the switch is "on" when GTP is bound and "off" when GDP is bound to the protein. The crystal structure of a complex between a nonhydrolyzable GTP analog and the catalytic domain of a RAS protein has been determined by a rotation-translation search method. The orientations and positions of four independent molecules have been determined using a single molecule as a probe in the search. The crystal structure reveals that the gamma phosphate of the GTP analog induces extensive conformational changes on two loop regions of the protein.

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Year:  1990        PMID: 2191303      PMCID: PMC54216          DOI: 10.1073/pnas.87.12.4849

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  A cytoplasmic protein stimulates normal N-ras p21 GTPase, but does not affect oncogenic mutants.

Authors:  M Trahey; F McCormick
Journal:  Science       Date:  1987-10-23       Impact factor: 47.728

Review 2.  G proteins: a family of signal transducers.

Authors:  L Stryer; H R Bourne
Journal:  Annu Rev Cell Biol       Date:  1986

Review 3.  G proteins: transducers of receptor-generated signals.

Authors:  A G Gilman
Journal:  Annu Rev Biochem       Date:  1987       Impact factor: 23.643

4.  Identification of effector residues and a neutralizing epitope of Ha-ras-encoded p21.

Authors:  I S Sigal; J B Gibbs; J S D'Alonzo; E M Scolnick
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

5.  Three-dimensional structure of an oncogene protein: catalytic domain of human c-H-ras p21.

Authors:  A M de Vos; L Tong; M V Milburn; P M Matias; J Jancarik; S Noguchi; S Nishimura; K Miura; E Ohtsuka; S H Kim
Journal:  Science       Date:  1988-02-19       Impact factor: 47.728

6.  Molecular cloning of two types of GAP complementary DNA from human placenta.

Authors:  M Trahey; G Wong; R Halenbeck; B Rubinfeld; G A Martin; M Ladner; C M Long; W J Crosier; K Watt; K Koths
Journal:  Science       Date:  1988-12-23       Impact factor: 47.728

Review 7.  ras genes.

Authors:  M Barbacid
Journal:  Annu Rev Biochem       Date:  1987       Impact factor: 23.643

8.  Diffraction methods for biological macromolecules. Use of the rotation and translation functions.

Authors:  E Lattman
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

9.  Cloning of bovine GAP and its interaction with oncogenic ras p21.

Authors:  U S Vogel; R A Dixon; M D Schaber; R E Diehl; M S Marshall; E M Scolnick; I S Sigal; J B Gibbs
Journal:  Nature       Date:  1988-09-01       Impact factor: 49.962

10.  The stereochemical course of phospho transfer catalyzed by adenylosuccinate synthetase. A reaction pathway via a phosphorylated intermediate with net inversion.

Authors:  M R Webb; G H Reed; B F Cooper; F B Rudolph
Journal:  J Biol Chem       Date:  1984-03-10       Impact factor: 5.157

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  25 in total

1.  Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain.

Authors:  Dong Hae Shin; Yun Lou; Jaru Jancarik; Hisao Yokota; Rosalind Kim; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-26       Impact factor: 11.205

2.  Dynamic properties of the Ras switch I region and its importance for binding to effectors.

Authors:  M Spoerner; C Herrmann; I R Vetter; H R Kalbitzer; A Wittinghofer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-24       Impact factor: 11.205

3.  Probing the wild-type HRas activation mechanism using steered molecular dynamics, understanding the energy barrier and role of water in the activation.

Authors:  Neeru Sharma; Uddhavesh Sonavane; Rajendra Joshi
Journal:  Eur Biophys J       Date:  2014-01-20       Impact factor: 1.733

4.  Structure-based sequence alignment of elongation factors Tu and G with related GTPases involved in translation.

Authors:  A Avarsson
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

Review 5.  Ras oncogenes: split personalities.

Authors:  Antoine E Karnoub; Robert A Weinberg
Journal:  Nat Rev Mol Cell Biol       Date:  2008-07       Impact factor: 94.444

6.  Sequential assignment of the backbone nuclei (1H, 15N and 13C) of c-H-ras p21 (1-166).GDP using a novel 4D NMR strategy.

Authors:  S L Campbell-Burk; P J Domaille; M A Starovasnik; W Boucher; E D Laue
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

7.  The membrane protein FeoB contains an intramolecular G protein essential for Fe(II) uptake in bacteria.

Authors:  Thomas C Marlovits; Winfried Haase; Christian Herrmann; Stephen G Aller; Vinzenz M Unger
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-22       Impact factor: 11.205

8.  Structural and biochemical studies of p21Ras S-nitrosylation and nitric oxide-mediated guanine nucleotide exchange.

Authors:  Jason G Williams; Kamesh Pappu; Sharon L Campbell
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-09       Impact factor: 11.205

9.  Sequence-specific 1H and 15N resonance assignments and secondary structure of GDP-bound human c-Ha-Ras protein in solution.

Authors:  Y Muto; K Yamasaki; Y Ito; S Yajima; H Masaki; T Uozumi; M Wälchli; S Nishimura; T Miyazawa; S Yokoyama
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

10.  Biophysical mechanism for ras-nanocluster formation and signaling in plasma membrane.

Authors:  Thomas Gurry; Ozan Kahramanoğullari; Robert G Endres
Journal:  PLoS One       Date:  2009-07-09       Impact factor: 3.240

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