Literature DB >> 21910151

Quantitative in vivo solubility and reconstitution of truncated circular permutants of green fluorescent protein.

Yao-Ming Huang1, Sasmita Nayak, Christopher Bystroff.   

Abstract

Several versions of split green fluorescent protein (GFP) fold and reconstitute fluorescence, as do many circular permutants, but little is known about the dependence of reconstitution on circular permutation. Explored here is the capacity of GFP to fold and reconstitute fluorescence from various truncated circular permutants, herein called "leave-one-outs" using a quantitative in vivo solubility assay and in vivo reconstitution of fluorescence. Twelve leave-one-out permutants are discussed, one for each of the 12 secondary structure elements. The results expand the outlook for the use of permuted split GFPs as specific and self-reporting gene encoded affinity reagents.
Copyright © 2011 The Protein Society.

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Year:  2011        PMID: 21910151      PMCID: PMC3267941          DOI: 10.1002/pro.735

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  15 in total

1.  Circular permutation and receptor insertion within green fluorescent proteins.

Authors:  G S Baird; D A Zacharias; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  One-step split GFP staining for sensitive protein detection and localization in mammalian cells.

Authors:  Lara Kaddoum; Eddy Magdeleine; Geoffrey S Waldo; Etienne Joly; Stéphanie Cabantous
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3.  Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein.

Authors:  Stéphanie Cabantous; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  Nat Biotechnol       Date:  2004-12-05       Impact factor: 54.908

4.  Engineering and characterization of a superfolder green fluorescent protein.

Authors:  Jean-Denis Pédelacq; Stéphanie Cabantous; Timothy Tran; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  Nat Biotechnol       Date:  2005-12-20       Impact factor: 54.908

5.  Stable intermediate states and high energy barriers in the unfolding of GFP.

Authors:  Jie-rong Huang; Timothy D Craggs; John Christodoulou; Sophie E Jackson
Journal:  J Mol Biol       Date:  2007-04-20       Impact factor: 5.469

6.  Fast complementation of split fluorescent protein triggered by DNA hybridization.

Authors:  Vadim V Demidov; Nikolay V Dokholyan; Carlos Witte-Hoffmann; Poornima Chalasani; Hung-Wei Yiu; Feng Ding; Yong Yu; Charles R Cantor; Natalia E Broude
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-06       Impact factor: 11.205

Review 7.  Non-native protein aggregation kinetics.

Authors:  Christopher J Roberts
Journal:  Biotechnol Bioeng       Date:  2007-12-01       Impact factor: 4.530

8.  Deconstructing green fluorescent protein.

Authors:  Kevin P Kent; William Childs; Steven G Boxer
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9.  Use of Ssp dnaB derived mini-intein as a fusion partner for production of recombinant human brain natriuretic peptide in Escherichia coli.

Authors:  Ziyong Sun; Junyong Chen; Hongwei Yao; Lili Liu; Jing Wang; Jing Zhang; Jian-Ning Liu
Journal:  Protein Expr Purif       Date:  2005-09       Impact factor: 1.650

10.  Synthetic control of green fluorescent protein.

Authors:  Kevin P Kent; Luke M Oltrogge; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2009-11-11       Impact factor: 15.419

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  9 in total

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Journal:  Bioinformatics       Date:  2013-12-25       Impact factor: 6.937

2.  Exploring the folding pathway of green fluorescent protein through disulfide engineering.

Authors:  Derek J Pitman; Shounak Banerjee; Stephen J Macari; Christopher A Castaldi; Donna E Crone; Christopher Bystroff
Journal:  Protein Sci       Date:  2015-01-13       Impact factor: 6.725

3.  Mispacking and the Fitness Landscape of the Green Fluorescent Protein Chromophore Milieu.

Authors:  Shounak Banerjee; Christian D Schenkelberg; Thomas B Jordan; Julia M Reimertz; Emily E Crone; Donna E Crone; Christopher Bystroff
Journal:  Biochemistry       Date:  2017-01-24       Impact factor: 3.162

4.  Toward Computationally Designed Self-Reporting Biosensors Using Leave-One-Out Green Fluorescent Protein.

Authors:  Yao-Ming Huang; Shounak Banerjee; Donna E Crone; Christian D Schenkelberg; Derek J Pitman; Patrick M Buck; Christopher Bystroff
Journal:  Biochemistry       Date:  2015-09-30       Impact factor: 3.162

5.  Circular permutation in proteins.

Authors:  Spencer Bliven; Andreas Prlić
Journal:  PLoS Comput Biol       Date:  2012-03-29       Impact factor: 4.475

6.  Characterization of Split Fluorescent Protein Variants and Quantitative Analyses of Their Self-Assembly Process.

Authors:  Tuğba Köker; Anthony Fernandez; Fabien Pinaud
Journal:  Sci Rep       Date:  2018-03-28       Impact factor: 4.379

7.  Substitutional landscape of a split fluorescent protein fragment using high-density peptide microarrays.

Authors:  Oana N Antonescu; Andreas Rasmussen; Nicole A M Damm; Ditte F Heidemann; Roman Popov; Alexander Nesterov-Mueller; Kristoffer E Johansson; Jakob R Winther
Journal:  PLoS One       Date:  2021-02-03       Impact factor: 3.240

8.  Multiplexed labeling of cellular proteins with split fluorescent protein tags.

Authors:  Ryo Tamura; Fangchao Jiang; Jin Xie; Daichi Kamiyama
Journal:  Commun Biol       Date:  2021-02-26

9.  Deletional protein engineering based on stable fold.

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Journal:  PLoS One       Date:  2012-12-11       Impact factor: 3.240

  9 in total

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