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Literature DB >> 21901603

High-throughput studies of protein glycoforms using antibody-lectin sandwich arrays.

Abstract

The antibody-lectin sandwich arrays (ALSA) is a powerful new tool for glycoproteomics research. ALSA enables precise measurements of the glycosylation states of multiple proteins captured directly from biological samples. The platform can be used in a high-throughput mode with low sample consumption, making it well suited to biomarker research exploring glycan alterations on specific proteins. This article provides detailed descriptions of the use of ALSA, with a particular focus on biomarker research. The preparation and selection of antibodies and lectins, the preparation and use of the arrays and samples, and special considerations for using the platform for biomarker research are covered.

Entities: Chemical Disease Species

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Year: 2011 PMID： 21901603 PMCID： PMC3705222 DOI： 10.1007/978-1-61779-286-1_15

Source DB: PubMed Journal: Methods Mol Biol ISSN： 1064-3745

15 in total

1. Multiplexed protein analysis using antibody microarrays and label-based detection.

Authors: Brian B Haab
Journal: Methods Mol Med Date: 2005

2. HUPO Plasma Proteome Project specimen collection and handling: towards the standardization of parameters for plasma proteome samples.

Authors: Alex J Rai; Craig A Gelfand; Bruce C Haywood; David J Warunek; Jizu Yi; Mark D Schuchard; Richard J Mehigh; Steven L Cockrill; Graham B I Scott; Harald Tammen; Peter Schulz-Knappe; David W Speicher; Frank Vitzthum; Brian B Haab; Gerard Siest; Daniel W Chan
Journal: Proteomics Date: 2005-08 Impact factor: 3.984

3. RCA-enhanced protein detection arrays.

Authors: Brian B Haab; Paul M Lizardi
Journal: Methods Mol Biol Date: 2006

Review 4. Carbohydrate microarrays: survey of fabrication techniques.

Authors: Adrian S Culf; Miroslava Cuperlovic-Culf; Rodney J Ouellette
Journal: OMICS Date: 2006

Review 5. Glycans in cancer and inflammation--potential for therapeutics and diagnostics.

Authors: Danielle H Dube; Carolyn R Bertozzi
Journal: Nat Rev Drug Discov Date: 2005-06 Impact factor: 84.694

6. Printed covalent glycan array for ligand profiling of diverse glycan binding proteins.

Authors: Ola Blixt; Steve Head; Tony Mondala; Christopher Scanlan; Margaret E Huflejt; Richard Alvarez; Marian C Bryan; Fabio Fazio; Daniel Calarese; James Stevens; Nahid Razi; David J Stevens; John J Skehel; Irma van Die; Dennis R Burton; Ian A Wilson; Richard Cummings; Nicolai Bovin; Chi-Huey Wong; James C Paulson
Journal: Proc Natl Acad Sci U S A Date: 2004-11-24 Impact factor: 11.205

Review 7. Carbohydrate microarrays.

Authors: Denong Wang
Journal: Proteomics Date: 2003-11 Impact factor: 3.984

8. A motif-based analysis of glycan array data to determine the specificities of glycan-binding proteins.

Authors: Andrew Porter; Tingting Yue; Lee Heeringa; Steven Day; Edward Suh; Brian B Haab
Journal: Glycobiology Date: 2009-11-29 Impact factor: 4.313

Review 9. Lectin-based structural glycomics: glycoproteomics and glycan profiling.

Authors: Jun Hirabayashi
Journal: Glycoconj J Date: 2004 Impact factor: 2.916

10. Multiplexed analysis of glycan variation on native proteins captured by antibody microarrays.

Authors: Songming Chen; Tom LaRoche; Darren Hamelinck; Derek Bergsma; Dean Brenner; Diane Simeone; Randall E Brand; Brian B Haab
Journal: Nat Methods Date: 2007-04-08 Impact factor: 28.547

15 in total

1. Diverse monoclonal antibodies against the CA 19-9 antigen show variation in binding specificity with consequences for clinical interpretation.

Authors: Katie Partyka; Kevin A Maupin; Randall E Brand; Brian B Haab
Journal: Proteomics Date: 2012-07 Impact factor: 3.984

2. Specific glycoforms of MUC5AC and endorepellin accurately distinguish mucinous from nonmucinous pancreatic cysts.

Authors: Zheng Cao; Kevin Maupin; Bryan Curnutte; Brian Fallon; Christa L Feasley; Elizabeth Brouhard; Richard Kwon; Christopher M West; John Cunningham; Randall Brand; Paola Castelli; Stefano Crippa; Ziding Feng; Peter Allen; Diane M Simeone; Brian B Haab
Journal: Mol Cell Proteomics Date: 2013-07-08 Impact factor: 5.911

3. Prediction of glycan motifs using quantitative analysis of multi-lectin binding: Motifs on MUC1 produced by cultured pancreatic cancer cells.

Authors: Calvin McCarter; Doron Kletter; Huiyuan Tang; Katie Partyka; Yinjiao Ma; Sudhir Singh; Jessica Yadav; Marshall Bern; Brian B Haab
Journal: Proteomics Clin Appl Date: 2013-09-13 Impact factor: 3.494

4. Glycan motif profiling reveals plasma sialyl-lewis x elevations in pancreatic cancers that are negative for sialyl-lewis A.

Authors: Huiyuan Tang; Sudhir Singh; Katie Partyka; Doron Kletter; Peter Hsueh; Jessica Yadav; Elliot Ensink; Marshall Bern; Galen Hostetter; Douglas Hartman; Ying Huang; Randall E Brand; Brian B Haab
Journal: Mol Cell Proteomics Date: 2015-03-02 Impact factor: 5.911