Literature DB >> 21900068

Automatic identification of functional clusters in FMRI data using spatial dependence.

Sai Ma1, Nicolle M Correa, Xi-Lin Li, Tom Eichele, Vince D Calhoun, Tülay Adalı.   

Abstract

In independent component analysis (ICA) of functional magnetic resonance imaging (fMRI) data, extracting a large number of maximally independent components provides a detailed functional segmentation of brain. However, such high-order segmentation does not establish the relationships among different brain networks, and also studying and classifying components can be challenging. In this study, we present a multidimensional ICA (MICA) scheme to achieve automatic component clustering. In our MICA framework, stable components are hierarchically grouped into clusters based on higher order statistical dependence--mutual information--among spatial components, instead of the typically used temporal correlation among time courses. The final cluster membership is determined using a statistical hypothesis testing method. Since ICA decomposition takes into account the modulation of the spatial maps, i.e., temporal information, our ICA-based approach incorporates both spatial and temporal information effectively. Our experimental results from both simulated and real fMRI datasets show that the use of spatial dependence leads to physiologically meaningful connectivity structure of brain networks, which is consistently identified across various ICA model orders and algorithms. In addition, we observe that components related to artifacts, including cerebrospinal fluid, arteries, and large draining veins, are grouped together and encouragingly distinguished from other components of interest.

Entities:  

Mesh:

Year:  2011        PMID: 21900068      PMCID: PMC3222740          DOI: 10.1109/TBME.2011.2167149

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  29 in total

1.  A default mode of brain function.

Authors:  M E Raichle; A M MacLeod; A Z Snyder; W J Powers; D A Gusnard; G L Shulman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-16       Impact factor: 11.205

2.  Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain.

Authors:  N Tzourio-Mazoyer; B Landeau; D Papathanassiou; F Crivello; O Etard; N Delcroix; B Mazoyer; M Joliot
Journal:  Neuroimage       Date:  2002-01       Impact factor: 6.556

3.  Classification of fMRI independent components using IC-fingerprints and support vector machine classifiers.

Authors:  Federico De Martino; Francesco Gentile; Fabrizio Esposito; Marco Balsi; Francesco Di Salle; Rainer Goebel; Elia Formisano
Journal:  Neuroimage       Date:  2006-10-27       Impact factor: 6.556

4.  Analysis of fMRI data by blind separation into independent spatial components.

Authors:  M J McKeown; S Makeig; G G Brown; T P Jung; S S Kindermann; A J Bell; T J Sejnowski
Journal:  Hum Brain Mapp       Date:  1998       Impact factor: 5.038

5.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
Journal:  Neural Comput       Date:  1995-11       Impact factor: 2.026

6.  Abnormal hemodynamics in schizophrenia during an auditory oddball task.

Authors:  Kent A Kiehl; Michael C Stevens; Kim Celone; Matthew Kurtz; John H Krystal
Journal:  Biol Psychiatry       Date:  2005-05-01       Impact factor: 13.382

7.  Aberrant "default mode" functional connectivity in schizophrenia.

Authors:  Abigail G Garrity; Godfrey D Pearlson; Kristen McKiernan; Dan Lloyd; Kent A Kiehl; Vince D Calhoun
Journal:  Am J Psychiatry       Date:  2007-03       Impact factor: 18.112

8.  Functional segmentation of the brain cortex using high model order group PICA.

Authors:  Vesa Kiviniemi; Tuomo Starck; Jukka Remes; Xiangyu Long; Juha Nikkinen; Marianne Haapea; Juha Veijola; Irma Moilanen; Matti Isohanni; Yu-Feng Zang; Osmo Tervonen
Journal:  Hum Brain Mapp       Date:  2009-12       Impact factor: 5.038

9.  SimTB, a simulation toolbox for fMRI data under a model of spatiotemporal separability.

Authors:  Erik B Erhardt; Elena A Allen; Yonghua Wei; Tom Eichele; Vince D Calhoun
Journal:  Neuroimage       Date:  2011-12-08       Impact factor: 6.556

10.  An ICA-based method for the identification of optimal FMRI features and components using combined group-discriminative techniques.

Authors:  Jing Sui; Tülay Adali; Godfrey D Pearlson; Vince D Calhoun
Journal:  Neuroimage       Date:  2009-02-10       Impact factor: 6.556

View more
  62 in total

1.  Differential functional brain network connectivity during visceral interoception as revealed by independent component analysis of fMRI TIME-series.

Authors:  Behnaz Jarrahi; Dante Mantini; Joshua Henk Balsters; Lars Michels; Thomas M Kessler; Ulrich Mehnert; Spyros S Kollias
Journal:  Hum Brain Mapp       Date:  2015-08-07       Impact factor: 5.038

2.  Transient Patterns of Functional Dysconnectivity in Clinical High Risk and Early Illness Schizophrenia Individuals Compared with Healthy Controls.

Authors:  Eva Mennigen; Susanna L Fryer; Barnaly Rashid; Eswar Damaraju; Yuhui Du; Rachel L Loewy; Barbara K Stuart; Vince D Calhoun; Daniel H Mathalon
Journal:  Brain Connect       Date:  2018-07-05

3.  Gene expression profiles in peripheral blood mononuclear cells correlate with salience network activity in chronic visceral pain: A pilot study.

Authors:  A Gupta; S Cole; J S Labus; S Joshi; T J Nguyen; L A Kilpatrick; K Tillisch; B D Naliboff; L Chang; E A Mayer
Journal:  Neurogastroenterol Motil       Date:  2017-02-12       Impact factor: 3.598

4.  Automated iterative reclustering framework for determining hierarchical functional networks in resting state fMRI.

Authors:  Seyed-Mohammad Shams; Babak Afshin-Pour; Hamid Soltanian-Zadeh; Gholam-Ali Hossein-Zadeh; Stephen C Strother
Journal:  Hum Brain Mapp       Date:  2015-06-02       Impact factor: 5.038

5.  Examining stability of independent component analysis based on coefficient and component matrices for voxel-based morphometry of structural magnetic resonance imaging.

Authors:  Qing Zhang; Guoqiang Hu; Lili Tian; Tapani Ristaniemi; Huili Wang; Hongjun Chen; Jianlin Wu; Fengyu Cong
Journal:  Cogn Neurodyn       Date:  2018-03-20       Impact factor: 5.082

6.  Comparison of functional network connectivity for passive-listening and active-response narrative comprehension in adolescents.

Authors:  Yingying Wang; Scott K Holland
Journal:  Brain Connect       Date:  2014-05

7.  Adolescent sex differences in cortico-subcortical functional connectivity during response inhibition.

Authors:  Yu Sun Chung; Vince Calhoun; Michael C Stevens
Journal:  Cogn Affect Behav Neurosci       Date:  2020-02       Impact factor: 3.282

8.  Parcellation of the human hippocampus based on gray matter volume covariance: Replicable results on healthy young adults.

Authors:  Ruiyang Ge; Paul Kot; Xiang Liu; Donna J Lang; Jane Z Wang; William G Honer; Fidel Vila-Rodriguez
Journal:  Hum Brain Mapp       Date:  2019-05-22       Impact factor: 5.038

9.  Association between the oral microbiome and brain resting state connectivity in smokers.

Authors:  Dongdong Lin; Kent E Hutchison; Salvador Portillo; Victor Vegara; Jarrod M Ellingson; Jingyu Liu; Kenneth S Krauter; Amanda Carroll-Portillo; Vince D Calhoun
Journal:  Neuroimage       Date:  2019-06-13       Impact factor: 6.556

10.  Detection of Mild Traumatic Brain Injury by Machine Learning Classification Using Resting State Functional Network Connectivity and Fractional Anisotropy.

Authors:  Victor M Vergara; Andrew R Mayer; Eswar Damaraju; Kent A Kiehl; Vince Calhoun
Journal:  J Neurotrauma       Date:  2016-11-21       Impact factor: 5.269

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.