Literature DB >> 21898652

A structural study of Hypocrea jecorina Cel5A.

Toni M Lee1, Mary F Farrow, Frances H Arnold, Stephen L Mayo.   

Abstract

Interest in generating lignocellulosic biofuels through enzymatic hydrolysis continues to rise as nonrenewable fossil fuels are depleted. The high cost of producing cellulases, hydrolytic enzymes that cleave cellulose into fermentable sugars, currently hinders economically viable biofuel production. Here, we report the crystal structure of a prevalent endoglucanase in the biofuels industry, Cel5A from the filamentous fungus Hypocrea jecorina. The structure reveals a general fold resembling that of the closest homolog with a high-resolution structure, Cel5A from Thermoascus aurantiacus. Consistent with previously described endoglucanase structures, the H. jecorina Cel5A active site contains a primarily hydrophobic substrate binding groove and a series of hydrogen bond networks surrounding two catalytic glutamates. The reported structure, however, demonstrates stark differences between side-chain identity, loop regions, and the number of disulfides. Such structural information may aid efforts to improve the stability of this protein for industrial use while maintaining enzymatic activity through revealing nonessential and immutable regions.
Copyright © 2011 The Protein Society.

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Year:  2011        PMID: 21898652      PMCID: PMC3267957          DOI: 10.1002/pro.730

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

1.  The crystal structure of the catalytic core domain of endoglucanase I from Trichoderma reesei at 3.6 A resolution, and a comparison with related enzymes.

Authors:  G J Kleywegt; J Y Zou; C Divne; G J Davies; I Sinning; J Stâhlberg; T Reinikainen; M Srisodsuk; T T Teeri; T A Jones
Journal:  J Mol Biol       Date:  1997-09-26       Impact factor: 5.469

2.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

3.  Challenges in engineering microbes for biofuels production.

Authors:  Gregory Stephanopoulos
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

4.  Snapshots along an enzymatic reaction coordinate: analysis of a retaining beta-glycoside hydrolase.

Authors:  G J Davies; L Mackenzie; A Varrot; M Dauter; A M Brzozowski; M Schülein; S G Withers
Journal:  Biochemistry       Date:  1998-08-25       Impact factor: 3.162

5.  Hydrolysis of microcrystalline cellulose by cellobiohydrolase I and endoglucanase II from Trichoderma reesei: adsorption, sugar production pattern, and synergism of the enzymes.

Authors:  J Medve; J Karlsson; D Lee; F Tjerneld
Journal:  Biotechnol Bioeng       Date:  1998-09-05       Impact factor: 4.530

Review 6.  Structural and biochemical studies of GH family 12 cellulases: improved thermal stability, and ligand complexes.

Authors:  Mats Sandgren; Jerry Ståhlberg; Colin Mitchinson
Journal:  Prog Biophys Mol Biol       Date:  2004-12-29       Impact factor: 3.667

7.  High frequency one-step gene replacement in Trichoderma reesei. II. Effects of deletions of individual cellulase genes.

Authors:  P L Suominen; A L Mäntylä; T Karhunen; S Hakola; H Nevalainen
Journal:  Mol Gen Genet       Date:  1993-12

8.  The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei.

Authors:  C Divne; J Ståhlberg; T Reinikainen; L Ruohonen; G Pettersson; J K Knowles; T T Teeri; T A Jones
Journal:  Science       Date:  1994-07-22       Impact factor: 47.728

9.  Evaluation of minimal Trichoderma reesei cellulase mixtures on differently pretreated Barley straw substrates.

Authors:  Lisa Rosgaard; Sven Pedersen; Jim Langston; Derek Akerhielm; Joel R Cherry; Anne S Meyer
Journal:  Biotechnol Prog       Date:  2007 Nov-Dec

10.  Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard.

Authors:  Thomas C Terwilliger; Ralf W Grosse-Kunstleve; Pavel V Afonine; Nigel W Moriarty; Peter H Zwart; Li Wei Hung; Randy J Read; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  9 in total

1.  Three-dimensional structure of RBcel1, a metagenome-derived psychrotolerant family GH5 endoglucanase.

Authors:  Maud Delsaute; Renaud Berlemont; Dominique Dehareng; Dany Van Elder; Moreno Galleni; Cédric Bauvois
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-07-26

Review 2.  Genomics review of holocellulose deconstruction by aspergilli.

Authors:  Fernando Segato; André R L Damásio; Rosymar C de Lucas; Fabio M Squina; Rolf A Prade
Journal:  Microbiol Mol Biol Rev       Date:  2014-12       Impact factor: 11.056

3.  Comparison of three ionic liquid-tolerant cellulases by molecular dynamics.

Authors:  Vance Jaeger; Patrick Burney; Jim Pfaendtner
Journal:  Biophys J       Date:  2015-02-17       Impact factor: 4.033

4.  High-resolution structure of a lytic polysaccharide monooxygenase from Hypocrea jecorina reveals a predicted linker as an integral part of the catalytic domain.

Authors:  Henrik Hansson; Saeid Karkehabadi; Nils Mikkelsen; Nicholai R Douglas; Steve Kim; Anna Lam; Thijs Kaper; Brad Kelemen; Katlyn K Meier; Stephen M Jones; Edward I Solomon; Mats Sandgren
Journal:  J Biol Chem       Date:  2017-09-12       Impact factor: 5.157

5.  Expression of recombinant cellulase Cel5A from Trichoderma reesei in tobacco plants.

Authors:  Megan Garvey; Johannes Klinger; Holger Klose; Rainer Fischer; Ulrich Commandeur
Journal:  J Vis Exp       Date:  2014-06-13       Impact factor: 1.355

6.  Periplasmic Cytophaga hutchinsonii Endoglucanases Are Required for Use of Crystalline Cellulose as the Sole Source of Carbon and Energy.

Authors:  Yongtao Zhu; Lanlan Han; Kathleen L Hefferon; Nicholas R Silvaggi; David B Wilson; Mark J McBride
Journal:  Appl Environ Microbiol       Date:  2016-07-15       Impact factor: 4.792

7.  Insights into exo- and endoglucanase activities of family 6 glycoside hydrolases from Podospora anserina.

Authors:  Laetitia Poidevin; Julia Feliu; Annick Doan; Jean-Guy Berrin; Mathieu Bey; Pedro M Coutinho; Bernard Henrissat; Eric Record; Senta Heiss-Blanquet
Journal:  Appl Environ Microbiol       Date:  2013-05-03       Impact factor: 4.792

8.  Enhancement of synthetic Trichoderma-based enzyme mixtures for biomass conversion with an alternative family 5 glycosyl hydrolase from Sporotrichum thermophile.

Authors:  Zhuoliang Ye; Yun Zheng; Bingyao Li; Melissa S Borrusch; Reginald Storms; Jonathan D Walton
Journal:  PLoS One       Date:  2014-10-08       Impact factor: 3.240

9.  Enhancing the catalytic activity of a novel GH5 cellulase GtCel5 from Gloeophyllum trabeum CBS 900.73 by site-directed mutagenesis on loop 6.

Authors:  Fei Zheng; Tao Tu; Xiaoyu Wang; Yuan Wang; Rui Ma; Xiaoyun Su; Xiangming Xie; Bin Yao; Huiying Luo
Journal:  Biotechnol Biofuels       Date:  2018-03-22       Impact factor: 6.040

  9 in total

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