Literature DB >> 21898111

Incorporating chemical signalling factors into cell-based models of growing epithelial tissues.

Aaron M Smith1, Ruth E Baker, David Kay, Philip K Maini.   

Abstract

In this paper we present a comprehensive computational framework within which the effects of chemical signalling factors on growing epithelial tissues can be studied. The method incorporates a vertex-based cell model, in conjunction with a solver for the governing chemical equations. The vertex model provides a natural mesh for the finite element method (FEM), with node movements determined by force laws. The arbitrary Lagrangian-Eulerian formulation is adopted to account for domain movement between iterations. The effects of cell proliferation and junctional rearrangements on the mesh are also examined. By implementing refinements of the mesh we show that the finite element (FE) approximation converges towards an accurate numerical solution. The potential utility of the system is demonstrated in the context of Decapentaplegic (Dpp), a morphogen which plays a crucial role in development of the Drosophila imaginal wing disc. Despite the presence of a Dpp gradient, growth is uniform across the wing disc. We make the growth rate of cells dependent on Dpp concentration and show that the number of proliferation events increases in regions of high concentration. This allows hypotheses regarding mechanisms of growth control to be rigorously tested. The method we describe may be adapted to a range of potential application areas, and to other cell-based models with designated node movements, to accurately probe the role of morphogens in epithelial tissues.

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Year:  2011        PMID: 21898111     DOI: 10.1007/s00285-011-0464-y

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  19 in total

1.  The influence of cell mechanics, cell-cell interactions, and proliferation on epithelial packing.

Authors:  Reza Farhadifar; Jens-Christian Röper; Benoit Aigouy; Suzanne Eaton; Frank Jülicher
Journal:  Curr Biol       Date:  2007-12-18       Impact factor: 10.834

2.  On the mechanism of wing size determination in fly development.

Authors:  Lars Hufnagel; Aurelio A Teleman; Hervé Rouault; Stephen M Cohen; Boris I Shraiman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-28       Impact factor: 11.205

3.  Exploring the effects of mechanical feedback on epithelial topology.

Authors:  Tinri Aegerter-Wilmsen; Alister C Smith; Alix J Christen; Christof M Aegerter; Ernst Hafen; Konrad Basler
Journal:  Development       Date:  2010-02       Impact factor: 6.868

4.  Cell competition, growth and size control in the Drosophila wing imaginal disc.

Authors:  Francisco A Martín; Salvador C Herrera; Ginés Morata
Journal:  Development       Date:  2009-11       Impact factor: 6.868

5.  Increased cell bond tension governs cell sorting at the Drosophila anteroposterior compartment boundary.

Authors:  Katharina P Landsberg; Reza Farhadifar; Jonas Ranft; Daiki Umetsu; Thomas J Widmann; Thomas Bittig; Amani Said; Frank Jülicher; Christian Dahmann
Journal:  Curr Biol       Date:  2009-10-29       Impact factor: 10.834

6.  The mechanical basis of morphogenesis. I. Epithelial folding and invagination.

Authors:  G M Odell; G Oster; P Alberch; B Burnside
Journal:  Dev Biol       Date:  1981-07-30       Impact factor: 3.582

7.  Model for the regulation of size in the wing imaginal disc of Drosophila.

Authors:  Tinri Aegerter-Wilmsen; Christof M Aegerter; Ernst Hafen; Konrad Basler
Journal:  Mech Dev       Date:  2006-12-29       Impact factor: 1.882

Review 8.  The Decapentaplegic morphogen gradient: from pattern formation to growth regulation.

Authors:  Markus Affolter; Konrad Basler
Journal:  Nat Rev Genet       Date:  2007-09       Impact factor: 53.242

Review 9.  Measuring dimensions: the regulation of size and shape.

Authors:  S J Day; P A Lawrence
Journal:  Development       Date:  2000-07       Impact factor: 6.868

10.  Dpp receptors are autonomously required for cell proliferation in the entire developing Drosophila wing.

Authors:  R Burke; K Basler
Journal:  Development       Date:  1996-07       Impact factor: 6.868

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  13 in total

1.  A free boundary mechanobiological model of epithelial tissues.

Authors:  Tamara A Tambyah; Ryan J Murphy; Pascal R Buenzli; Matthew J Simpson
Journal:  Proc Math Phys Eng Sci       Date:  2020-11-18       Impact factor: 2.704

Review 2.  Vertex models of epithelial morphogenesis.

Authors:  Alexander G Fletcher; Miriam Osterfield; Ruth E Baker; Stanislav Y Shvartsman
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

3.  Computational analysis of three-dimensional epithelial morphogenesis using vertex models.

Authors:  XinXin Du; Miriam Osterfield; Stanislav Y Shvartsman
Journal:  Phys Biol       Date:  2014-11-20       Impact factor: 2.583

4.  Patterning of wound-induced intercellular Ca(2+) flashes in a developing epithelium.

Authors:  Cody Narciso; Qinfeng Wu; Pavel Brodskiy; George Garston; Ruth Baker; Alexander Fletcher; Jeremiah Zartman
Journal:  Phys Biol       Date:  2015-09-02       Impact factor: 2.583

Review 5.  Sizing it up: the mechanical feedback hypothesis of organ growth regulation.

Authors:  Amy Buchmann; Mark Alber; Jeremiah J Zartman
Journal:  Semin Cell Dev Biol       Date:  2014-07-11       Impact factor: 7.727

6.  Multi-cellular rosettes in the mouse visceral endoderm facilitate the ordered migration of anterior visceral endoderm cells.

Authors:  Georgios Trichas; Aaron M Smith; Natalia White; Vivienne Wilkins; Tomoko Watanabe; Abigail Moore; Bradley Joyce; Jacintha Sugnaseelan; Tristan A Rodriguez; David Kay; Ruth E Baker; Philip K Maini; Shankar Srinivas
Journal:  PLoS Biol       Date:  2012-02-07       Impact factor: 8.029

Review 7.  Vertex models: from cell mechanics to tissue morphogenesis.

Authors:  Silvanus Alt; Poulami Ganguly; Guillaume Salbreux
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-05-19       Impact factor: 6.237

8.  Comparing individual-based approaches to modelling the self-organization of multicellular tissues.

Authors:  James M Osborne; Alexander G Fletcher; Joe M Pitt-Francis; Philip K Maini; David J Gavaghan
Journal:  PLoS Comput Biol       Date:  2017-02-13       Impact factor: 4.475

9.  A gradient of matrix-bound FGF-2 and perlecan is available to lens epithelial cells.

Authors:  Weiju Wu; Frederique M Tholozan; Martin W Goldberg; Leon Bowen; Junjie Wu; Roy A Quinlan
Journal:  Exp Eye Res       Date:  2013-12-14       Impact factor: 3.467

10.  Interpreting scratch assays using pair density dynamics and approximate Bayesian computation.

Authors:  Stuart T Johnston; Matthew J Simpson; D L Sean McElwain; Benjamin J Binder; Joshua V Ross
Journal:  Open Biol       Date:  2014-09       Impact factor: 6.411

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